Gene : Medtr4g115880 M. truncatula Mt4.0v1
Defline:  (1 of 3) PF02148//PF13423 - Zn-finger in ubiquitin-hydrolases and other protein (zf-UBP) // Ubiquitin carboxyl-terminal hydrolase (UCH_1) Description:  ubiquitin carboxyl-terminal hydrolase
Genomic Order:  6087 Name:  ? Medtr4g115880
Secondary Identifier:  ? PAC:31110932
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g115880 0.5kb upstream 0.5kb upstream 5402 true chr4: 47881620-47887021 Medicago truncatula
Medtr4g115880 0.5kb upstream 0.5kb upstream 500 false chr4: 47886522-47887021 Medicago truncatula
Medtr4g115880 0.5kb downstream 0.5kb downstream 5402 true chr4: 47881120-47886521 Medicago truncatula
Medtr4g115880 0.5kb downstream 0.5kb downstream 500 false chr4: 47881120-47881619 Medicago truncatula
Medtr4g115880 1.0kb upstream 1.0kb upstream 5902 true chr4: 47881620-47887521 Medicago truncatula
Medtr4g115880 1.0kb upstream 1.0kb upstream 1000 false chr4: 47886522-47887521 Medicago truncatula
Medtr4g115880 1.0kb downstream 1.0kb downstream 5902 true chr4: 47880620-47886521 Medicago truncatula
Medtr4g115880 1.0kb downstream 1.0kb downstream 1000 false chr4: 47880620-47881619 Medicago truncatula
Medtr4g115880 2.0kb upstream 2.0kb upstream 6902 true chr4: 47881620-47888521 Medicago truncatula
Medtr4g115880 2.0kb upstream 2.0kb upstream 2000 false chr4: 47886522-47888521 Medicago truncatula
Medtr4g115880 2.0kb downstream 2.0kb downstream 6902 true chr4: 47879620-47886521 Medicago truncatula
Medtr4g115880 2.0kb downstream 2.0kb downstream 2000 false chr4: 47879620-47881619 Medicago truncatula
Medtr4g115880 5.0kb upstream 5.0kb upstream 9902 true chr4: 47881620-47891521 Medicago truncatula
Medtr4g115880 5.0kb upstream 5.0kb upstream 5000 false chr4: 47886522-47891521 Medicago truncatula
Medtr4g115880 5.0kb downstream 5.0kb downstream 9902 true chr4: 47876620-47886521 Medicago truncatula
Medtr4g115880 5.0kb downstream 5.0kb downstream 5000 false chr4: 47876620-47881619 Medicago truncatula
Medtr4g115880 10.0kb upstream 10.0kb upstream 14902 true chr4: 47881620-47896521 Medicago truncatula
Medtr4g115880 10.0kb upstream 10.0kb upstream 10000 false chr4: 47886522-47896521 Medicago truncatula
Medtr4g115880 10.0kb downstream 10.0kb downstream 14902 true chr4: 47871620-47886521 Medicago truncatula
Medtr4g115880 10.0kb downstream 10.0kb downstream 10000 false chr4: 47871620-47881619 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304291 5265 Fabidae View MSA
124070704 5270 Rosid View MSA
123736956 5271 Pentapetalae View MSA
122795648 5272 Eudicot View MSA
122047391 5273 Angiosperm View MSA
121345894 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.557       Low
cufflinks 1.151        
cufflinks 0.982        
cufflinks 1.558       High
cufflinks 0.91        
cufflinks 1.24        
cufflinks 0.838        
cufflinks 0.63       Low
cufflinks 1.924       High

0 Strain