Gene : Medtr4g104580 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12419:SF10 - PROTEIN OTUB-3, ISOFORM B Description:  OTU-like cysteine protease
Genomic Order:  5469 Name:  ? Medtr4g104580
Secondary Identifier:  ? PAC:31114096
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g104580 0.5kb upstream 0.5kb upstream 6817 true chr4: 43295746-43302562 Medicago truncatula
Medtr4g104580 0.5kb upstream 0.5kb upstream 500 false chr4: 43302063-43302562 Medicago truncatula
Medtr4g104580 0.5kb downstream 0.5kb downstream 6817 true chr4: 43295246-43302062 Medicago truncatula
Medtr4g104580 0.5kb downstream 0.5kb downstream 500 false chr4: 43295246-43295745 Medicago truncatula
Medtr4g104580 1.0kb upstream 1.0kb upstream 7317 true chr4: 43295746-43303062 Medicago truncatula
Medtr4g104580 1.0kb upstream 1.0kb upstream 1000 false chr4: 43302063-43303062 Medicago truncatula
Medtr4g104580 1.0kb downstream 1.0kb downstream 7317 true chr4: 43294746-43302062 Medicago truncatula
Medtr4g104580 1.0kb downstream 1.0kb downstream 1000 false chr4: 43294746-43295745 Medicago truncatula
Medtr4g104580 2.0kb upstream 2.0kb upstream 8317 true chr4: 43295746-43304062 Medicago truncatula
Medtr4g104580 2.0kb upstream 2.0kb upstream 2000 false chr4: 43302063-43304062 Medicago truncatula
Medtr4g104580 2.0kb downstream 2.0kb downstream 8317 true chr4: 43293746-43302062 Medicago truncatula
Medtr4g104580 2.0kb downstream 2.0kb downstream 2000 false chr4: 43293746-43295745 Medicago truncatula
Medtr4g104580 5.0kb upstream 5.0kb upstream 11317 true chr4: 43295746-43307062 Medicago truncatula
Medtr4g104580 5.0kb upstream 5.0kb upstream 5000 false chr4: 43302063-43307062 Medicago truncatula
Medtr4g104580 5.0kb downstream 5.0kb downstream 11317 true chr4: 43290746-43302062 Medicago truncatula
Medtr4g104580 5.0kb downstream 5.0kb downstream 5000 false chr4: 43290746-43295745 Medicago truncatula
Medtr4g104580 10.0kb upstream 10.0kb upstream 16317 true chr4: 43295746-43312062 Medicago truncatula
Medtr4g104580 10.0kb upstream 10.0kb upstream 10000 false chr4: 43302063-43312062 Medicago truncatula
Medtr4g104580 10.0kb downstream 10.0kb downstream 16317 true chr4: 43285746-43302062 Medicago truncatula
Medtr4g104580 10.0kb downstream 10.0kb downstream 10000 false chr4: 43285746-43295745 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307529 5265 Fabidae View MSA
124062666 5270 Rosid View MSA
123738342 5271 Pentapetalae View MSA
122787520 5272 Eudicot View MSA
122043014 5273 Angiosperm View MSA
121346407 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.619        
cufflinks 2.743        
cufflinks 4.3       High
cufflinks 2.345        
cufflinks 2.841        
cufflinks 1.539       Low
cufflinks 2.86        
cufflinks 3.753       High
cufflinks 2.908        

0 Strain