Gene : Medtr4g106700 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12297 - HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED Description:  RING-H2 finger ATL48-like protein
Genomic Order:  5567 Name:  ? Medtr4g106700
Secondary Identifier:  ? PAC:31111730
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g106700 0.5kb upstream 0.5kb upstream 2779 true chr4: 44035681-44038459 Medicago truncatula
Medtr4g106700 0.5kb upstream 0.5kb upstream 500 false chr4: 44037960-44038459 Medicago truncatula
Medtr4g106700 0.5kb downstream 0.5kb downstream 2779 true chr4: 44035181-44037959 Medicago truncatula
Medtr4g106700 0.5kb downstream 0.5kb downstream 500 false chr4: 44035181-44035680 Medicago truncatula
Medtr4g106700 1.0kb upstream 1.0kb upstream 3279 true chr4: 44035681-44038959 Medicago truncatula
Medtr4g106700 1.0kb upstream 1.0kb upstream 1000 false chr4: 44037960-44038959 Medicago truncatula
Medtr4g106700 1.0kb downstream 1.0kb downstream 3279 true chr4: 44034681-44037959 Medicago truncatula
Medtr4g106700 1.0kb downstream 1.0kb downstream 1000 false chr4: 44034681-44035680 Medicago truncatula
Medtr4g106700 2.0kb upstream 2.0kb upstream 4279 true chr4: 44035681-44039959 Medicago truncatula
Medtr4g106700 2.0kb upstream 2.0kb upstream 2000 false chr4: 44037960-44039959 Medicago truncatula
Medtr4g106700 2.0kb downstream 2.0kb downstream 4279 true chr4: 44033681-44037959 Medicago truncatula
Medtr4g106700 2.0kb downstream 2.0kb downstream 2000 false chr4: 44033681-44035680 Medicago truncatula
Medtr4g106700 5.0kb upstream 5.0kb upstream 7279 true chr4: 44035681-44042959 Medicago truncatula
Medtr4g106700 5.0kb upstream 5.0kb upstream 5000 false chr4: 44037960-44042959 Medicago truncatula
Medtr4g106700 5.0kb downstream 5.0kb downstream 7279 true chr4: 44030681-44037959 Medicago truncatula
Medtr4g106700 5.0kb downstream 5.0kb downstream 5000 false chr4: 44030681-44035680 Medicago truncatula
Medtr4g106700 10.0kb upstream 10.0kb upstream 12279 true chr4: 44035681-44047959 Medicago truncatula
Medtr4g106700 10.0kb upstream 10.0kb upstream 10000 false chr4: 44037960-44047959 Medicago truncatula
Medtr4g106700 10.0kb downstream 10.0kb downstream 12279 true chr4: 44025681-44037959 Medicago truncatula
Medtr4g106700 10.0kb downstream 10.0kb downstream 10000 false chr4: 44025681-44035680 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306805 5265 Fabidae View MSA
124069964 5270 Rosid View MSA
123750302 5271 Pentapetalae View MSA
122790917 5272 Eudicot View MSA
122045148 5273 Angiosperm View MSA
121347874 5274 Embryophyte View MSA
123423754 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.214        
cufflinks 3.318        
cufflinks 4.146        
cufflinks 28.942     High High
cufflinks 3.046        
cufflinks 41.251     High High
cufflinks 7.632        
cufflinks 3.275        
cufflinks 8.194        

0 Strain