Gene : Medtr4g108940 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31311:SF4 - GLYCOSYLTRANSFERASE 3-RELATED Description:  xyloglucan xylosyltransferase
Genomic Order:  5723 Name:  ? Medtr4g108940
Secondary Identifier:  ? PAC:31111974
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5936 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g108940 0.5kb upstream 0.5kb upstream 2407 true chr4: 45167161-45169567 Medicago truncatula
Medtr4g108940 0.5kb upstream 0.5kb upstream 500 false chr4: 45167161-45167660 Medicago truncatula
Medtr4g108940 0.5kb downstream 0.5kb downstream 2407 true chr4: 45167661-45170067 Medicago truncatula
Medtr4g108940 0.5kb downstream 0.5kb downstream 500 false chr4: 45169568-45170067 Medicago truncatula
Medtr4g108940 1.0kb upstream 1.0kb upstream 2907 true chr4: 45166661-45169567 Medicago truncatula
Medtr4g108940 1.0kb upstream 1.0kb upstream 1000 false chr4: 45166661-45167660 Medicago truncatula
Medtr4g108940 1.0kb downstream 1.0kb downstream 2907 true chr4: 45167661-45170567 Medicago truncatula
Medtr4g108940 1.0kb downstream 1.0kb downstream 1000 false chr4: 45169568-45170567 Medicago truncatula
Medtr4g108940 2.0kb upstream 2.0kb upstream 3907 true chr4: 45165661-45169567 Medicago truncatula
Medtr4g108940 2.0kb upstream 2.0kb upstream 2000 false chr4: 45165661-45167660 Medicago truncatula
Medtr4g108940 2.0kb downstream 2.0kb downstream 3907 true chr4: 45167661-45171567 Medicago truncatula
Medtr4g108940 2.0kb downstream 2.0kb downstream 2000 false chr4: 45169568-45171567 Medicago truncatula
Medtr4g108940 5.0kb upstream 5.0kb upstream 6907 true chr4: 45162661-45169567 Medicago truncatula
Medtr4g108940 5.0kb upstream 5.0kb upstream 5000 false chr4: 45162661-45167660 Medicago truncatula
Medtr4g108940 5.0kb downstream 5.0kb downstream 6907 true chr4: 45167661-45174567 Medicago truncatula
Medtr4g108940 5.0kb downstream 5.0kb downstream 5000 false chr4: 45169568-45174567 Medicago truncatula
Medtr4g108940 10.0kb upstream 10.0kb upstream 11907 true chr4: 45157661-45169567 Medicago truncatula
Medtr4g108940 10.0kb upstream 10.0kb upstream 10000 false chr4: 45157661-45167660 Medicago truncatula
Medtr4g108940 10.0kb downstream 10.0kb downstream 11907 true chr4: 45167661-45179567 Medicago truncatula
Medtr4g108940 10.0kb downstream 10.0kb downstream 10000 false chr4: 45169568-45179567 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311174 5265 Fabidae View MSA
124066918 5270 Rosid View MSA
123741049 5271 Pentapetalae View MSA
122787674 5272 Eudicot View MSA
122047290 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.649     High High
cufflinks 8.834        
cufflinks 14.619     High  
cufflinks 5.894       Low
cufflinks 13.426     High  
cufflinks 9.102        
cufflinks 15.766     High  
cufflinks 8.669        
cufflinks 31.981     High High

0 Strain