Gene : Medtr4g109300 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR14363:SF17 - HEPARANASE-LIKE PROTEIN 1-RELATED Description:  glycoside hydrolase family 79 amine-terminal domain protein
Genomic Order:  5749 Name:  ? Medtr4g109300
Secondary Identifier:  ? PAC:31109284
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7213 Medicago truncatula pathologic  
Mtruncatula PWY-7214 Medicago truncatula pathologic  
Mtruncatula PWY-7445 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g109300 0.5kb upstream 0.5kb upstream 3660 true chr4: 45387086-45390745 Medicago truncatula
Medtr4g109300 0.5kb upstream 0.5kb upstream 500 false chr4: 45387086-45387585 Medicago truncatula
Medtr4g109300 0.5kb downstream 0.5kb downstream 3660 true chr4: 45387586-45391245 Medicago truncatula
Medtr4g109300 0.5kb downstream 0.5kb downstream 500 false chr4: 45390746-45391245 Medicago truncatula
Medtr4g109300 1.0kb upstream 1.0kb upstream 4160 true chr4: 45386586-45390745 Medicago truncatula
Medtr4g109300 1.0kb upstream 1.0kb upstream 1000 false chr4: 45386586-45387585 Medicago truncatula
Medtr4g109300 1.0kb downstream 1.0kb downstream 4160 true chr4: 45387586-45391745 Medicago truncatula
Medtr4g109300 1.0kb downstream 1.0kb downstream 1000 false chr4: 45390746-45391745 Medicago truncatula
Medtr4g109300 2.0kb upstream 2.0kb upstream 5160 true chr4: 45385586-45390745 Medicago truncatula
Medtr4g109300 2.0kb upstream 2.0kb upstream 2000 false chr4: 45385586-45387585 Medicago truncatula
Medtr4g109300 2.0kb downstream 2.0kb downstream 5160 true chr4: 45387586-45392745 Medicago truncatula
Medtr4g109300 2.0kb downstream 2.0kb downstream 2000 false chr4: 45390746-45392745 Medicago truncatula
Medtr4g109300 5.0kb upstream 5.0kb upstream 8160 true chr4: 45382586-45390745 Medicago truncatula
Medtr4g109300 5.0kb upstream 5.0kb upstream 5000 false chr4: 45382586-45387585 Medicago truncatula
Medtr4g109300 5.0kb downstream 5.0kb downstream 8160 true chr4: 45387586-45395745 Medicago truncatula
Medtr4g109300 5.0kb downstream 5.0kb downstream 5000 false chr4: 45390746-45395745 Medicago truncatula
Medtr4g109300 10.0kb upstream 10.0kb upstream 13160 true chr4: 45377586-45390745 Medicago truncatula
Medtr4g109300 10.0kb upstream 10.0kb upstream 10000 false chr4: 45377586-45387585 Medicago truncatula
Medtr4g109300 10.0kb downstream 10.0kb downstream 13160 true chr4: 45387586-45400745 Medicago truncatula
Medtr4g109300 10.0kb downstream 10.0kb downstream 10000 false chr4: 45390746-45400745 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311990 5265 Fabidae View MSA
124070666 5270 Rosid View MSA
123745187 5271 Pentapetalae View MSA
122795641 5272 Eudicot View MSA
122049598 5273 Angiosperm View MSA
121348264 5274 Embryophyte View MSA
123380798 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.089       Low
cufflinks 0.466        
cufflinks 0.334        
cufflinks 0.153        
cufflinks 0.892       High
cufflinks 0.095     Low Low
cufflinks 0.454        
cufflinks 0.39        
cufflinks 0.318        

0 Strain