Gene : Medtr4g087150 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  4291 Name:  ? Medtr4g087150
Secondary Identifier:  ? PAC:31111908
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g087150 0.5kb upstream 0.5kb upstream 3814 true chr4: 34144072-34147885 Medicago truncatula
Medtr4g087150 0.5kb upstream 0.5kb upstream 500 false chr4: 34147386-34147885 Medicago truncatula
Medtr4g087150 0.5kb downstream 0.5kb downstream 3814 true chr4: 34143572-34147385 Medicago truncatula
Medtr4g087150 0.5kb downstream 0.5kb downstream 500 false chr4: 34143572-34144071 Medicago truncatula
Medtr4g087150 1.0kb upstream 1.0kb upstream 4314 true chr4: 34144072-34148385 Medicago truncatula
Medtr4g087150 1.0kb upstream 1.0kb upstream 1000 false chr4: 34147386-34148385 Medicago truncatula
Medtr4g087150 1.0kb downstream 1.0kb downstream 4314 true chr4: 34143072-34147385 Medicago truncatula
Medtr4g087150 1.0kb downstream 1.0kb downstream 1000 false chr4: 34143072-34144071 Medicago truncatula
Medtr4g087150 2.0kb upstream 2.0kb upstream 5314 true chr4: 34144072-34149385 Medicago truncatula
Medtr4g087150 2.0kb upstream 2.0kb upstream 2000 false chr4: 34147386-34149385 Medicago truncatula
Medtr4g087150 2.0kb downstream 2.0kb downstream 5314 true chr4: 34142072-34147385 Medicago truncatula
Medtr4g087150 2.0kb downstream 2.0kb downstream 2000 false chr4: 34142072-34144071 Medicago truncatula
Medtr4g087150 5.0kb upstream 5.0kb upstream 8314 true chr4: 34144072-34152385 Medicago truncatula
Medtr4g087150 5.0kb upstream 5.0kb upstream 5000 false chr4: 34147386-34152385 Medicago truncatula
Medtr4g087150 5.0kb downstream 5.0kb downstream 8314 true chr4: 34139072-34147385 Medicago truncatula
Medtr4g087150 5.0kb downstream 5.0kb downstream 5000 false chr4: 34139072-34144071 Medicago truncatula
Medtr4g087150 10.0kb upstream 10.0kb upstream 13314 true chr4: 34144072-34157385 Medicago truncatula
Medtr4g087150 10.0kb upstream 10.0kb upstream 10000 false chr4: 34147386-34157385 Medicago truncatula
Medtr4g087150 10.0kb downstream 10.0kb downstream 13314 true chr4: 34134072-34147385 Medicago truncatula
Medtr4g087150 10.0kb downstream 10.0kb downstream 10000 false chr4: 34134072-34144071 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304567 5265 Fabidae View MSA
124071074 5270 Rosid View MSA
123742346 5271 Pentapetalae View MSA
122794962 5272 Eudicot View MSA
122044957 5273 Angiosperm View MSA
121352585 5274 Embryophyte View MSA
123382887 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.369        
cufflinks 0.139        
cufflinks 0.334        
cufflinks 0.087       Low
cufflinks 0.679       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.218        
cufflinks 0.258        
cufflinks 0.208        

0 Strain