Gene : Medtr4g087895 M. truncatula Mt4.0v1
Defline:  (1 of 3) 6.6.1.1 - Magnesium chelatase / Protoporphyrin IX Mg-chelatase Description:  magnesium-chelatase subunit ChlI
Genomic Order:  4343 Name:  ? Medtr4g087895
Secondary Identifier:  ? PAC:31113874
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CHLOROPHYLL-SYN Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g087895 0.5kb upstream 0.5kb upstream 3065 true chr4: 34588279-34591343 Medicago truncatula
Medtr4g087895 0.5kb upstream 0.5kb upstream 500 false chr4: 34588279-34588778 Medicago truncatula
Medtr4g087895 0.5kb downstream 0.5kb downstream 3065 true chr4: 34588779-34591843 Medicago truncatula
Medtr4g087895 0.5kb downstream 0.5kb downstream 500 false chr4: 34591344-34591843 Medicago truncatula
Medtr4g087895 1.0kb upstream 1.0kb upstream 3565 true chr4: 34587779-34591343 Medicago truncatula
Medtr4g087895 1.0kb upstream 1.0kb upstream 1000 false chr4: 34587779-34588778 Medicago truncatula
Medtr4g087895 1.0kb downstream 1.0kb downstream 3565 true chr4: 34588779-34592343 Medicago truncatula
Medtr4g087895 1.0kb downstream 1.0kb downstream 1000 false chr4: 34591344-34592343 Medicago truncatula
Medtr4g087895 2.0kb upstream 2.0kb upstream 4565 true chr4: 34586779-34591343 Medicago truncatula
Medtr4g087895 2.0kb upstream 2.0kb upstream 2000 false chr4: 34586779-34588778 Medicago truncatula
Medtr4g087895 2.0kb downstream 2.0kb downstream 4565 true chr4: 34588779-34593343 Medicago truncatula
Medtr4g087895 2.0kb downstream 2.0kb downstream 2000 false chr4: 34591344-34593343 Medicago truncatula
Medtr4g087895 5.0kb upstream 5.0kb upstream 7565 true chr4: 34583779-34591343 Medicago truncatula
Medtr4g087895 5.0kb upstream 5.0kb upstream 5000 false chr4: 34583779-34588778 Medicago truncatula
Medtr4g087895 5.0kb downstream 5.0kb downstream 7565 true chr4: 34588779-34596343 Medicago truncatula
Medtr4g087895 5.0kb downstream 5.0kb downstream 5000 false chr4: 34591344-34596343 Medicago truncatula
Medtr4g087895 10.0kb upstream 10.0kb upstream 12565 true chr4: 34578779-34591343 Medicago truncatula
Medtr4g087895 10.0kb upstream 10.0kb upstream 10000 false chr4: 34578779-34588778 Medicago truncatula
Medtr4g087895 10.0kb downstream 10.0kb downstream 12565 true chr4: 34588779-34601343 Medicago truncatula
Medtr4g087895 10.0kb downstream 10.0kb downstream 10000 false chr4: 34591344-34601343 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026298 5273 Angiosperm View MSA
122313972 5265 Fabidae View MSA
124063666 5270 Rosid View MSA
123736903 5271 Pentapetalae View MSA
122790961 5272 Eudicot View MSA
121346302 5274 Embryophyte View MSA
123426232 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.337        
cufflinks 1.628        
cufflinks 2.495        
cufflinks 0.463       Low
cufflinks 2.946       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.922        
cufflinks 1.726        
cufflinks 0.439       Low

0 Strain