Gene : Medtr4g088225 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF41 - X-BOX TRANSCRIPTION FACTOR-RELATED Description:  cellulose synthase-like protein D3
Genomic Order:  4379 Name:  ? Medtr4g088225
Secondary Identifier:  ? PAC:31106956
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1001 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g088225 0.5kb upstream 0.5kb upstream 3766 true chr4: 34817008-34820773 Medicago truncatula
Medtr4g088225 0.5kb upstream 0.5kb upstream 500 false chr4: 34820274-34820773 Medicago truncatula
Medtr4g088225 0.5kb downstream 0.5kb downstream 3766 true chr4: 34816508-34820273 Medicago truncatula
Medtr4g088225 0.5kb downstream 0.5kb downstream 500 false chr4: 34816508-34817007 Medicago truncatula
Medtr4g088225 1.0kb upstream 1.0kb upstream 4266 true chr4: 34817008-34821273 Medicago truncatula
Medtr4g088225 1.0kb upstream 1.0kb upstream 1000 false chr4: 34820274-34821273 Medicago truncatula
Medtr4g088225 1.0kb downstream 1.0kb downstream 4266 true chr4: 34816008-34820273 Medicago truncatula
Medtr4g088225 1.0kb downstream 1.0kb downstream 1000 false chr4: 34816008-34817007 Medicago truncatula
Medtr4g088225 2.0kb upstream 2.0kb upstream 5266 true chr4: 34817008-34822273 Medicago truncatula
Medtr4g088225 2.0kb upstream 2.0kb upstream 2000 false chr4: 34820274-34822273 Medicago truncatula
Medtr4g088225 2.0kb downstream 2.0kb downstream 5266 true chr4: 34815008-34820273 Medicago truncatula
Medtr4g088225 2.0kb downstream 2.0kb downstream 2000 false chr4: 34815008-34817007 Medicago truncatula
Medtr4g088225 5.0kb upstream 5.0kb upstream 8266 true chr4: 34817008-34825273 Medicago truncatula
Medtr4g088225 5.0kb upstream 5.0kb upstream 5000 false chr4: 34820274-34825273 Medicago truncatula
Medtr4g088225 5.0kb downstream 5.0kb downstream 8266 true chr4: 34812008-34820273 Medicago truncatula
Medtr4g088225 5.0kb downstream 5.0kb downstream 5000 false chr4: 34812008-34817007 Medicago truncatula
Medtr4g088225 10.0kb upstream 10.0kb upstream 13266 true chr4: 34817008-34830273 Medicago truncatula
Medtr4g088225 10.0kb upstream 10.0kb upstream 10000 false chr4: 34820274-34830273 Medicago truncatula
Medtr4g088225 10.0kb downstream 10.0kb downstream 13266 true chr4: 34807008-34820273 Medicago truncatula
Medtr4g088225 10.0kb downstream 10.0kb downstream 10000 false chr4: 34807008-34817007 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309823 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.58        
cufflinks 8.678        
cufflinks 9.771       High
cufflinks 2.398        
cufflinks 6.213        
cufflinks 1.051        
cufflinks 1.4        
cufflinks 7.233        
cufflinks 0.428       Low

0 Strain