Gene : Medtr4g101990 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31500:SF7 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Description:  AT hook motif DNA-binding family protein
Genomic Order:  5317 Name:  ? Medtr4g101990
Secondary Identifier:  ? PAC:31107256
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g101990 0.5kb upstream 0.5kb upstream 5616 true chr4: 42201732-42207347 Medicago truncatula
Medtr4g101990 0.5kb upstream 0.5kb upstream 500 false chr4: 42201732-42202231 Medicago truncatula
Medtr4g101990 0.5kb downstream 0.5kb downstream 5616 true chr4: 42202232-42207847 Medicago truncatula
Medtr4g101990 0.5kb downstream 0.5kb downstream 500 false chr4: 42207348-42207847 Medicago truncatula
Medtr4g101990 1.0kb upstream 1.0kb upstream 6116 true chr4: 42201232-42207347 Medicago truncatula
Medtr4g101990 1.0kb upstream 1.0kb upstream 1000 false chr4: 42201232-42202231 Medicago truncatula
Medtr4g101990 1.0kb downstream 1.0kb downstream 6116 true chr4: 42202232-42208347 Medicago truncatula
Medtr4g101990 1.0kb downstream 1.0kb downstream 1000 false chr4: 42207348-42208347 Medicago truncatula
Medtr4g101990 2.0kb upstream 2.0kb upstream 7116 true chr4: 42200232-42207347 Medicago truncatula
Medtr4g101990 2.0kb upstream 2.0kb upstream 2000 false chr4: 42200232-42202231 Medicago truncatula
Medtr4g101990 2.0kb downstream 2.0kb downstream 7116 true chr4: 42202232-42209347 Medicago truncatula
Medtr4g101990 2.0kb downstream 2.0kb downstream 2000 false chr4: 42207348-42209347 Medicago truncatula
Medtr4g101990 5.0kb upstream 5.0kb upstream 10116 true chr4: 42197232-42207347 Medicago truncatula
Medtr4g101990 5.0kb upstream 5.0kb upstream 5000 false chr4: 42197232-42202231 Medicago truncatula
Medtr4g101990 5.0kb downstream 5.0kb downstream 10116 true chr4: 42202232-42212347 Medicago truncatula
Medtr4g101990 5.0kb downstream 5.0kb downstream 5000 false chr4: 42207348-42212347 Medicago truncatula
Medtr4g101990 10.0kb upstream 10.0kb upstream 15116 true chr4: 42192232-42207347 Medicago truncatula
Medtr4g101990 10.0kb upstream 10.0kb upstream 10000 false chr4: 42192232-42202231 Medicago truncatula
Medtr4g101990 10.0kb downstream 10.0kb downstream 15116 true chr4: 42202232-42217347 Medicago truncatula
Medtr4g101990 10.0kb downstream 10.0kb downstream 10000 false chr4: 42207348-42217347 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302466 5265 Fabidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.341        
cufflinks 0.106       Low
cufflinks 0.161        
cufflinks 6.992       High
cufflinks 0.224        
cufflinks 2.15        
cufflinks 5.96       High
cufflinks 0.119       Low
cufflinks 7.66       High

0 Strain