Gene : Medtr4g088440 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF14780 - Domain of unknown function (DUF4477) (DUF4477) Description:  hypothetical protein
Genomic Order:  4404 Name:  ? Medtr4g088440
Secondary Identifier:  ? PAC:31108165
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g088440 0.5kb upstream 0.5kb upstream 6427 true chr4: 35063872-35070298 Medicago truncatula
Medtr4g088440 0.5kb upstream 0.5kb upstream 500 false chr4: 35063872-35064371 Medicago truncatula
Medtr4g088440 0.5kb downstream 0.5kb downstream 6427 true chr4: 35064372-35070798 Medicago truncatula
Medtr4g088440 0.5kb downstream 0.5kb downstream 500 false chr4: 35070299-35070798 Medicago truncatula
Medtr4g088440 1.0kb upstream 1.0kb upstream 6927 true chr4: 35063372-35070298 Medicago truncatula
Medtr4g088440 1.0kb upstream 1.0kb upstream 1000 false chr4: 35063372-35064371 Medicago truncatula
Medtr4g088440 1.0kb downstream 1.0kb downstream 6927 true chr4: 35064372-35071298 Medicago truncatula
Medtr4g088440 1.0kb downstream 1.0kb downstream 1000 false chr4: 35070299-35071298 Medicago truncatula
Medtr4g088440 2.0kb upstream 2.0kb upstream 7927 true chr4: 35062372-35070298 Medicago truncatula
Medtr4g088440 2.0kb upstream 2.0kb upstream 2000 false chr4: 35062372-35064371 Medicago truncatula
Medtr4g088440 2.0kb downstream 2.0kb downstream 7927 true chr4: 35064372-35072298 Medicago truncatula
Medtr4g088440 2.0kb downstream 2.0kb downstream 2000 false chr4: 35070299-35072298 Medicago truncatula
Medtr4g088440 5.0kb upstream 5.0kb upstream 10927 true chr4: 35059372-35070298 Medicago truncatula
Medtr4g088440 5.0kb upstream 5.0kb upstream 5000 false chr4: 35059372-35064371 Medicago truncatula
Medtr4g088440 5.0kb downstream 5.0kb downstream 10927 true chr4: 35064372-35075298 Medicago truncatula
Medtr4g088440 5.0kb downstream 5.0kb downstream 5000 false chr4: 35070299-35075298 Medicago truncatula
Medtr4g088440 10.0kb upstream 10.0kb upstream 15927 true chr4: 35054372-35070298 Medicago truncatula
Medtr4g088440 10.0kb upstream 10.0kb upstream 10000 false chr4: 35054372-35064371 Medicago truncatula
Medtr4g088440 10.0kb downstream 10.0kb downstream 15927 true chr4: 35064372-35080298 Medicago truncatula
Medtr4g088440 10.0kb downstream 10.0kb downstream 10000 false chr4: 35070299-35080298 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122261555 5265 Fabidae Singleton cluster - no MSA
124037705 5270 Rosid View MSA
123610450 5271 Pentapetalae View MSA
122645067 5272 Eudicot View MSA
122045884 5273 Angiosperm View MSA
121347885 5274 Embryophyte View MSA
123380665 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.363       High
cufflinks 0.186        
cufflinks 0.237        
cufflinks 0.052     Low Low
cufflinks 0.274        
cufflinks 0.161        
cufflinks 0.263        
cufflinks 0.22        
cufflinks 0.09     Low Low

0 Strain