Gene : Medtr4g088915 M. truncatula Mt4.0v1
Defline:  (1 of 6) PF05755 - Rubber elongation factor protein (REF) (REF) Description:  rubber elongation factor protein
Genomic Order:  4478 Name:  ? Medtr4g088915
Secondary Identifier:  ? PAC:31115134
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g088915 0.5kb upstream 0.5kb upstream 908 true chr4: 35511701-35512608 Medicago truncatula
Medtr4g088915 0.5kb upstream 0.5kb upstream 500 false chr4: 35512109-35512608 Medicago truncatula
Medtr4g088915 0.5kb downstream 0.5kb downstream 908 true chr4: 35511201-35512108 Medicago truncatula
Medtr4g088915 0.5kb downstream 0.5kb downstream 500 false chr4: 35511201-35511700 Medicago truncatula
Medtr4g088915 1.0kb upstream 1.0kb upstream 1408 true chr4: 35511701-35513108 Medicago truncatula
Medtr4g088915 1.0kb upstream 1.0kb upstream 1000 false chr4: 35512109-35513108 Medicago truncatula
Medtr4g088915 1.0kb downstream 1.0kb downstream 1408 true chr4: 35510701-35512108 Medicago truncatula
Medtr4g088915 1.0kb downstream 1.0kb downstream 1000 false chr4: 35510701-35511700 Medicago truncatula
Medtr4g088915 2.0kb upstream 2.0kb upstream 2408 true chr4: 35511701-35514108 Medicago truncatula
Medtr4g088915 2.0kb upstream 2.0kb upstream 2000 false chr4: 35512109-35514108 Medicago truncatula
Medtr4g088915 2.0kb downstream 2.0kb downstream 2408 true chr4: 35509701-35512108 Medicago truncatula
Medtr4g088915 2.0kb downstream 2.0kb downstream 2000 false chr4: 35509701-35511700 Medicago truncatula
Medtr4g088915 5.0kb upstream 5.0kb upstream 5408 true chr4: 35511701-35517108 Medicago truncatula
Medtr4g088915 5.0kb upstream 5.0kb upstream 5000 false chr4: 35512109-35517108 Medicago truncatula
Medtr4g088915 5.0kb downstream 5.0kb downstream 5408 true chr4: 35506701-35512108 Medicago truncatula
Medtr4g088915 5.0kb downstream 5.0kb downstream 5000 false chr4: 35506701-35511700 Medicago truncatula
Medtr4g088915 10.0kb upstream 10.0kb upstream 10408 true chr4: 35511701-35522108 Medicago truncatula
Medtr4g088915 10.0kb upstream 10.0kb upstream 10000 false chr4: 35512109-35522108 Medicago truncatula
Medtr4g088915 10.0kb downstream 10.0kb downstream 10408 true chr4: 35501701-35512108 Medicago truncatula
Medtr4g088915 10.0kb downstream 10.0kb downstream 10000 false chr4: 35501701-35511700 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121656191 5273 Angiosperm View MSA
122297777 5265 Fabidae View MSA
124036148 5270 Rosid View MSA
123609537 5271 Pentapetalae View MSA
122644185 5272 Eudicot View MSA
120928276 5274 Embryophyte View MSA
122968889 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.145       Low
cufflinks 3.461        
cufflinks 4.945       High
cufflinks 0.114       Low
cufflinks 5.005       High
cufflinks 0.599        
cufflinks 0.359        
cufflinks 3.257        
cufflinks 0.383        

0 Strain