Gene : Medtr4g134210 M. truncatula Mt4.0v1
Defline:  (1 of 32) PF03000 - NPH3 family (NPH3) Description:  phototropic-responsive NPH3 family protein
Genomic Order:  7264 Name:  ? Medtr4g134210
Secondary Identifier:  ? PAC:31109439
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g134210 0.5kb upstream 0.5kb upstream 6576 true chr4: 56181405-56187980 Medicago truncatula
Medtr4g134210 0.5kb upstream 0.5kb upstream 500 false chr4: 56181405-56181904 Medicago truncatula
Medtr4g134210 0.5kb downstream 0.5kb downstream 6576 true chr4: 56181905-56188480 Medicago truncatula
Medtr4g134210 0.5kb downstream 0.5kb downstream 500 false chr4: 56187981-56188480 Medicago truncatula
Medtr4g134210 1.0kb upstream 1.0kb upstream 7076 true chr4: 56180905-56187980 Medicago truncatula
Medtr4g134210 1.0kb upstream 1.0kb upstream 1000 false chr4: 56180905-56181904 Medicago truncatula
Medtr4g134210 1.0kb downstream 1.0kb downstream 7076 true chr4: 56181905-56188980 Medicago truncatula
Medtr4g134210 1.0kb downstream 1.0kb downstream 1000 false chr4: 56187981-56188980 Medicago truncatula
Medtr4g134210 2.0kb upstream 2.0kb upstream 8076 true chr4: 56179905-56187980 Medicago truncatula
Medtr4g134210 2.0kb upstream 2.0kb upstream 2000 false chr4: 56179905-56181904 Medicago truncatula
Medtr4g134210 2.0kb downstream 2.0kb downstream 8076 true chr4: 56181905-56189980 Medicago truncatula
Medtr4g134210 2.0kb downstream 2.0kb downstream 2000 false chr4: 56187981-56189980 Medicago truncatula
Medtr4g134210 5.0kb upstream 5.0kb upstream 11076 true chr4: 56176905-56187980 Medicago truncatula
Medtr4g134210 5.0kb upstream 5.0kb upstream 5000 false chr4: 56176905-56181904 Medicago truncatula
Medtr4g134210 5.0kb downstream 5.0kb downstream 11076 true chr4: 56181905-56192980 Medicago truncatula
Medtr4g134210 5.0kb downstream 5.0kb downstream 5000 false chr4: 56187981-56192980 Medicago truncatula
Medtr4g134210 10.0kb upstream 10.0kb upstream 16076 true chr4: 56171905-56187980 Medicago truncatula
Medtr4g134210 10.0kb upstream 10.0kb upstream 10000 false chr4: 56171905-56181904 Medicago truncatula
Medtr4g134210 10.0kb downstream 10.0kb downstream 16076 true chr4: 56181905-56197980 Medicago truncatula
Medtr4g134210 10.0kb downstream 10.0kb downstream 10000 false chr4: 56187981-56197980 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026454 5273 Angiosperm View MSA
122313072 5265 Fabidae View MSA
124067148 5270 Rosid View MSA
123737998 5271 Pentapetalae View MSA
122789015 5272 Eudicot View MSA
121296339 5274 Embryophyte View MSA
123334520 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.391        
cufflinks 0.87       High
cufflinks 0.768        
cufflinks 0.406        
cufflinks 0.992       High
cufflinks 0.341        
cufflinks 0.56        
cufflinks 0.56        
cufflinks 0.231       Low

0 Strain