Gene : Medtr5g016260 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13683//PTHR13683:SF342 - ASPARTYL PROTEASES Description:  eukaryotic aspartyl protease family protein
Genomic Order:  854 Name:  ? Medtr5g016260
Secondary Identifier:  ? PAC:31086529
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g016260 0.5kb upstream 0.5kb upstream 7636 true chr5: 5793491-5801126 Medicago truncatula
Medtr5g016260 0.5kb upstream 0.5kb upstream 500 false chr5: 5800627-5801126 Medicago truncatula
Medtr5g016260 0.5kb downstream 0.5kb downstream 7636 true chr5: 5792991-5800626 Medicago truncatula
Medtr5g016260 0.5kb downstream 0.5kb downstream 500 false chr5: 5792991-5793490 Medicago truncatula
Medtr5g016260 1.0kb upstream 1.0kb upstream 8136 true chr5: 5793491-5801626 Medicago truncatula
Medtr5g016260 1.0kb upstream 1.0kb upstream 1000 false chr5: 5800627-5801626 Medicago truncatula
Medtr5g016260 1.0kb downstream 1.0kb downstream 8136 true chr5: 5792491-5800626 Medicago truncatula
Medtr5g016260 1.0kb downstream 1.0kb downstream 1000 false chr5: 5792491-5793490 Medicago truncatula
Medtr5g016260 2.0kb upstream 2.0kb upstream 9136 true chr5: 5793491-5802626 Medicago truncatula
Medtr5g016260 2.0kb upstream 2.0kb upstream 2000 false chr5: 5800627-5802626 Medicago truncatula
Medtr5g016260 2.0kb downstream 2.0kb downstream 9136 true chr5: 5791491-5800626 Medicago truncatula
Medtr5g016260 2.0kb downstream 2.0kb downstream 2000 false chr5: 5791491-5793490 Medicago truncatula
Medtr5g016260 5.0kb upstream 5.0kb upstream 12136 true chr5: 5793491-5805626 Medicago truncatula
Medtr5g016260 5.0kb upstream 5.0kb upstream 5000 false chr5: 5800627-5805626 Medicago truncatula
Medtr5g016260 5.0kb downstream 5.0kb downstream 12136 true chr5: 5788491-5800626 Medicago truncatula
Medtr5g016260 5.0kb downstream 5.0kb downstream 5000 false chr5: 5788491-5793490 Medicago truncatula
Medtr5g016260 10.0kb upstream 10.0kb upstream 17136 true chr5: 5793491-5810626 Medicago truncatula
Medtr5g016260 10.0kb upstream 10.0kb upstream 10000 false chr5: 5800627-5810626 Medicago truncatula
Medtr5g016260 10.0kb downstream 10.0kb downstream 17136 true chr5: 5783491-5800626 Medicago truncatula
Medtr5g016260 10.0kb downstream 10.0kb downstream 10000 false chr5: 5783491-5793490 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297513 5265 Fabidae View MSA
124072520 5270 Rosid View MSA
123741714 5271 Pentapetalae View MSA
122786782 5272 Eudicot View MSA
122041856 5273 Angiosperm View MSA
121346441 5274 Embryophyte View MSA
123428674 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.858        
cufflinks 1.14        
cufflinks 1.185        
cufflinks 0.734        
cufflinks 1.4        
cufflinks 0.346       Low
cufflinks 0.872        
cufflinks 1.01        
cufflinks 1.32        

0 Strain