Gene : Medtr5g004910 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11079:SF58 - RNA PSEUDOURIDINE SYNTHASE 4, MITOCHONDRIAL Description:  RNA pseudouridine synthase
Genomic Order:  20 Name:  ? Medtr5g004910
Secondary Identifier:  ? PAC:31087257
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g004910 0.5kb upstream 0.5kb upstream 2933 true chr5: 183651-186583 Medicago truncatula
Medtr5g004910 0.5kb upstream 0.5kb upstream 500 false chr5: 186084-186583 Medicago truncatula
Medtr5g004910 0.5kb downstream 0.5kb downstream 2933 true chr5: 183151-186083 Medicago truncatula
Medtr5g004910 0.5kb downstream 0.5kb downstream 500 false chr5: 183151-183650 Medicago truncatula
Medtr5g004910 1.0kb upstream 1.0kb upstream 3433 true chr5: 183651-187083 Medicago truncatula
Medtr5g004910 1.0kb upstream 1.0kb upstream 1000 false chr5: 186084-187083 Medicago truncatula
Medtr5g004910 1.0kb downstream 1.0kb downstream 3433 true chr5: 182651-186083 Medicago truncatula
Medtr5g004910 1.0kb downstream 1.0kb downstream 1000 false chr5: 182651-183650 Medicago truncatula
Medtr5g004910 2.0kb upstream 2.0kb upstream 4433 true chr5: 183651-188083 Medicago truncatula
Medtr5g004910 2.0kb upstream 2.0kb upstream 2000 false chr5: 186084-188083 Medicago truncatula
Medtr5g004910 2.0kb downstream 2.0kb downstream 4433 true chr5: 181651-186083 Medicago truncatula
Medtr5g004910 2.0kb downstream 2.0kb downstream 2000 false chr5: 181651-183650 Medicago truncatula
Medtr5g004910 5.0kb upstream 5.0kb upstream 7433 true chr5: 183651-191083 Medicago truncatula
Medtr5g004910 5.0kb upstream 5.0kb upstream 5000 false chr5: 186084-191083 Medicago truncatula
Medtr5g004910 5.0kb downstream 5.0kb downstream 7433 true chr5: 178651-186083 Medicago truncatula
Medtr5g004910 5.0kb downstream 5.0kb downstream 5000 false chr5: 178651-183650 Medicago truncatula
Medtr5g004910 10.0kb upstream 10.0kb upstream 12433 true chr5: 183651-196083 Medicago truncatula
Medtr5g004910 10.0kb upstream 10.0kb upstream 10000 false chr5: 186084-196083 Medicago truncatula
Medtr5g004910 10.0kb downstream 10.0kb downstream 12433 true chr5: 173651-186083 Medicago truncatula
Medtr5g004910 10.0kb downstream 10.0kb downstream 10000 false chr5: 173651-183650 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307711 5265 Fabidae View MSA
124062896 5270 Rosid View MSA
123739402 5271 Pentapetalae View MSA
122789155 5272 Eudicot View MSA
122044884 5273 Angiosperm View MSA
121348863 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.863        
cufflinks 1.99       Low
cufflinks 2.261        
cufflinks 2.492        
cufflinks 2.878        
cufflinks 1.738       Low
cufflinks 3.313       High
cufflinks 2.16        
cufflinks 3.327       High

0 Strain