Gene : Medtr5g006420 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  organelle transcript processing protein, putative
Genomic Order:  125 Name:  ? Medtr5g006420
Secondary Identifier:  ? PAC:31085832
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g006420 0.5kb upstream 0.5kb upstream 3947 true chr5: 911390-915336 Medicago truncatula
Medtr5g006420 0.5kb upstream 0.5kb upstream 500 false chr5: 911390-911889 Medicago truncatula
Medtr5g006420 0.5kb downstream 0.5kb downstream 3947 true chr5: 911890-915836 Medicago truncatula
Medtr5g006420 0.5kb downstream 0.5kb downstream 500 false chr5: 915337-915836 Medicago truncatula
Medtr5g006420 1.0kb upstream 1.0kb upstream 4447 true chr5: 910890-915336 Medicago truncatula
Medtr5g006420 1.0kb upstream 1.0kb upstream 1000 false chr5: 910890-911889 Medicago truncatula
Medtr5g006420 1.0kb downstream 1.0kb downstream 4447 true chr5: 911890-916336 Medicago truncatula
Medtr5g006420 1.0kb downstream 1.0kb downstream 1000 false chr5: 915337-916336 Medicago truncatula
Medtr5g006420 2.0kb upstream 2.0kb upstream 5447 true chr5: 909890-915336 Medicago truncatula
Medtr5g006420 2.0kb upstream 2.0kb upstream 2000 false chr5: 909890-911889 Medicago truncatula
Medtr5g006420 2.0kb downstream 2.0kb downstream 5447 true chr5: 911890-917336 Medicago truncatula
Medtr5g006420 2.0kb downstream 2.0kb downstream 2000 false chr5: 915337-917336 Medicago truncatula
Medtr5g006420 5.0kb upstream 5.0kb upstream 8447 true chr5: 906890-915336 Medicago truncatula
Medtr5g006420 5.0kb upstream 5.0kb upstream 5000 false chr5: 906890-911889 Medicago truncatula
Medtr5g006420 5.0kb downstream 5.0kb downstream 8447 true chr5: 911890-920336 Medicago truncatula
Medtr5g006420 5.0kb downstream 5.0kb downstream 5000 false chr5: 915337-920336 Medicago truncatula
Medtr5g006420 10.0kb upstream 10.0kb upstream 13447 true chr5: 901890-915336 Medicago truncatula
Medtr5g006420 10.0kb upstream 10.0kb upstream 10000 false chr5: 901890-911889 Medicago truncatula
Medtr5g006420 10.0kb downstream 10.0kb downstream 13447 true chr5: 911890-925336 Medicago truncatula
Medtr5g006420 10.0kb downstream 10.0kb downstream 10000 false chr5: 915337-925336 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300254 5265 Fabidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.24       High
cufflinks 0.514        
cufflinks 0.773        
cufflinks 0.273       Low
cufflinks 1.147       High
cufflinks 0.416        
cufflinks 0.644        
cufflinks 0.614        
cufflinks 0.607        

0 Strain