Gene : Medtr5g006140 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11558//PTHR11558:SF30 - SPERMIDINE/SPERMINE SYNTHASE Description:  thermospermine synthase ACAULIS protein
Genomic Order:  102 Name:  ? Medtr5g006140
Secondary Identifier:  ? PAC:31090289
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula BSUBPOLYAMSYN-PWY Medicago truncatula pathologic  
Mtruncatula POLYAMINSYN3-PWY Medicago truncatula pathologic  
Mtruncatula PWY-7528 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g006140 0.5kb upstream 0.5kb upstream 3504 true chr5: 783809-787312 Medicago truncatula
Medtr5g006140 0.5kb upstream 0.5kb upstream 500 false chr5: 786813-787312 Medicago truncatula
Medtr5g006140 0.5kb downstream 0.5kb downstream 3504 true chr5: 783309-786812 Medicago truncatula
Medtr5g006140 0.5kb downstream 0.5kb downstream 500 false chr5: 783309-783808 Medicago truncatula
Medtr5g006140 1.0kb upstream 1.0kb upstream 4004 true chr5: 783809-787812 Medicago truncatula
Medtr5g006140 1.0kb upstream 1.0kb upstream 1000 false chr5: 786813-787812 Medicago truncatula
Medtr5g006140 1.0kb downstream 1.0kb downstream 4004 true chr5: 782809-786812 Medicago truncatula
Medtr5g006140 1.0kb downstream 1.0kb downstream 1000 false chr5: 782809-783808 Medicago truncatula
Medtr5g006140 2.0kb upstream 2.0kb upstream 5004 true chr5: 783809-788812 Medicago truncatula
Medtr5g006140 2.0kb upstream 2.0kb upstream 2000 false chr5: 786813-788812 Medicago truncatula
Medtr5g006140 2.0kb downstream 2.0kb downstream 5004 true chr5: 781809-786812 Medicago truncatula
Medtr5g006140 2.0kb downstream 2.0kb downstream 2000 false chr5: 781809-783808 Medicago truncatula
Medtr5g006140 5.0kb upstream 5.0kb upstream 8004 true chr5: 783809-791812 Medicago truncatula
Medtr5g006140 5.0kb upstream 5.0kb upstream 5000 false chr5: 786813-791812 Medicago truncatula
Medtr5g006140 5.0kb downstream 5.0kb downstream 8004 true chr5: 778809-786812 Medicago truncatula
Medtr5g006140 5.0kb downstream 5.0kb downstream 5000 false chr5: 778809-783808 Medicago truncatula
Medtr5g006140 10.0kb upstream 10.0kb upstream 13004 true chr5: 783809-796812 Medicago truncatula
Medtr5g006140 10.0kb upstream 10.0kb upstream 10000 false chr5: 786813-796812 Medicago truncatula
Medtr5g006140 10.0kb downstream 10.0kb downstream 13004 true chr5: 773809-786812 Medicago truncatula
Medtr5g006140 10.0kb downstream 10.0kb downstream 10000 false chr5: 773809-783808 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312400 5265 Fabidae View MSA
124069905 5270 Rosid View MSA
123748388 5271 Pentapetalae View MSA
122794179 5272 Eudicot View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.1        
cufflinks 2.774        
cufflinks 3.528        
cufflinks 3.226        
cufflinks 3.216        
cufflinks 0.611       Low
cufflinks 5.124       High
cufflinks 3.201        
cufflinks 2.802        

0 Strain