Gene : Medtr4g131270 M. truncatula Mt4.0v1
Defline:  (1 of 5) 4.2.1.70//5.4.99.12 - Pseudouridylate synthase / Uracil hydrolyase // tRNA pseudouridine(38-40) synthase / tRNA pseudouridylate synthase I Description:  tRNA pseudouridine synthase A, related protein
Genomic Order:  7037 Name:  ? Medtr4g131270
Secondary Identifier:  ? PAC:31110439
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6019 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g131270 0.5kb upstream 0.5kb upstream 2582 true chr4: 54766231-54768812 Medicago truncatula
Medtr4g131270 0.5kb upstream 0.5kb upstream 500 false chr4: 54768313-54768812 Medicago truncatula
Medtr4g131270 0.5kb downstream 0.5kb downstream 2582 true chr4: 54765731-54768312 Medicago truncatula
Medtr4g131270 0.5kb downstream 0.5kb downstream 500 false chr4: 54765731-54766230 Medicago truncatula
Medtr4g131270 1.0kb upstream 1.0kb upstream 3082 true chr4: 54766231-54769312 Medicago truncatula
Medtr4g131270 1.0kb upstream 1.0kb upstream 1000 false chr4: 54768313-54769312 Medicago truncatula
Medtr4g131270 1.0kb downstream 1.0kb downstream 3082 true chr4: 54765231-54768312 Medicago truncatula
Medtr4g131270 1.0kb downstream 1.0kb downstream 1000 false chr4: 54765231-54766230 Medicago truncatula
Medtr4g131270 2.0kb upstream 2.0kb upstream 4082 true chr4: 54766231-54770312 Medicago truncatula
Medtr4g131270 2.0kb upstream 2.0kb upstream 2000 false chr4: 54768313-54770312 Medicago truncatula
Medtr4g131270 2.0kb downstream 2.0kb downstream 4082 true chr4: 54764231-54768312 Medicago truncatula
Medtr4g131270 2.0kb downstream 2.0kb downstream 2000 false chr4: 54764231-54766230 Medicago truncatula
Medtr4g131270 5.0kb upstream 5.0kb upstream 7082 true chr4: 54766231-54773312 Medicago truncatula
Medtr4g131270 5.0kb upstream 5.0kb upstream 5000 false chr4: 54768313-54773312 Medicago truncatula
Medtr4g131270 5.0kb downstream 5.0kb downstream 7082 true chr4: 54761231-54768312 Medicago truncatula
Medtr4g131270 5.0kb downstream 5.0kb downstream 5000 false chr4: 54761231-54766230 Medicago truncatula
Medtr4g131270 10.0kb upstream 10.0kb upstream 12082 true chr4: 54766231-54778312 Medicago truncatula
Medtr4g131270 10.0kb upstream 10.0kb upstream 10000 false chr4: 54768313-54778312 Medicago truncatula
Medtr4g131270 10.0kb downstream 10.0kb downstream 12082 true chr4: 54756231-54768312 Medicago truncatula
Medtr4g131270 10.0kb downstream 10.0kb downstream 10000 false chr4: 54756231-54766230 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305842 5265 Fabidae View MSA
124062436 5270 Rosid View MSA
123743490 5271 Pentapetalae View MSA
122793573 5272 Eudicot View MSA
122043730 5273 Angiosperm View MSA
121347551 5274 Embryophyte View MSA
123427150 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.476       Low
cufflinks 1.263        
cufflinks 1.785       High
cufflinks 0.496       Low
cufflinks 1.577        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.065        
cufflinks 1.532        
cufflinks 0.693        

0 Strain