Gene : Medtr4g125890 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG2406 - MADS box transcription factor Description:  SGT1-plant-like protein
Genomic Order:  6696 Name:  ? Medtr4g125890
Secondary Identifier:  ? PAC:31108383
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g125890 0.5kb upstream 0.5kb upstream 6070 true chr4: 52268563-52274632 Medicago truncatula
Medtr4g125890 0.5kb upstream 0.5kb upstream 500 false chr4: 52274133-52274632 Medicago truncatula
Medtr4g125890 0.5kb downstream 0.5kb downstream 6070 true chr4: 52268063-52274132 Medicago truncatula
Medtr4g125890 0.5kb downstream 0.5kb downstream 500 false chr4: 52268063-52268562 Medicago truncatula
Medtr4g125890 1.0kb upstream 1.0kb upstream 6570 true chr4: 52268563-52275132 Medicago truncatula
Medtr4g125890 1.0kb upstream 1.0kb upstream 1000 false chr4: 52274133-52275132 Medicago truncatula
Medtr4g125890 1.0kb downstream 1.0kb downstream 6570 true chr4: 52267563-52274132 Medicago truncatula
Medtr4g125890 1.0kb downstream 1.0kb downstream 1000 false chr4: 52267563-52268562 Medicago truncatula
Medtr4g125890 2.0kb upstream 2.0kb upstream 7570 true chr4: 52268563-52276132 Medicago truncatula
Medtr4g125890 2.0kb upstream 2.0kb upstream 2000 false chr4: 52274133-52276132 Medicago truncatula
Medtr4g125890 2.0kb downstream 2.0kb downstream 7570 true chr4: 52266563-52274132 Medicago truncatula
Medtr4g125890 2.0kb downstream 2.0kb downstream 2000 false chr4: 52266563-52268562 Medicago truncatula
Medtr4g125890 5.0kb upstream 5.0kb upstream 10570 true chr4: 52268563-52279132 Medicago truncatula
Medtr4g125890 5.0kb upstream 5.0kb upstream 5000 false chr4: 52274133-52279132 Medicago truncatula
Medtr4g125890 5.0kb downstream 5.0kb downstream 10570 true chr4: 52263563-52274132 Medicago truncatula
Medtr4g125890 5.0kb downstream 5.0kb downstream 5000 false chr4: 52263563-52268562 Medicago truncatula
Medtr4g125890 10.0kb upstream 10.0kb upstream 15570 true chr4: 52268563-52284132 Medicago truncatula
Medtr4g125890 10.0kb upstream 10.0kb upstream 10000 false chr4: 52274133-52284132 Medicago truncatula
Medtr4g125890 10.0kb downstream 10.0kb downstream 15570 true chr4: 52258563-52274132 Medicago truncatula
Medtr4g125890 10.0kb downstream 10.0kb downstream 10000 false chr4: 52258563-52268562 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122261587 5265 Fabidae Singleton cluster - no MSA
124072194 5270 Rosid View MSA
123740362 5271 Pentapetalae View MSA
122792261 5272 Eudicot View MSA
122046439 5273 Angiosperm View MSA
121348661 5274 Embryophyte View MSA
123424797 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.485       High
cufflinks 0.429        
cufflinks 0.847        
cufflinks 0.179       Low
cufflinks 0.629        
cufflinks 0.206        
cufflinks 0.227        
cufflinks 0.573        
cufflinks 0.218        

0 Strain