Gene : Medtr4g123440 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Description:  alanyl-tRNA synthetase
Genomic Order:  6519 Name:  ? Medtr4g123440
Secondary Identifier:  ? PAC:31115362
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g123440 0.5kb upstream 0.5kb upstream 1783 true chr4: 50936582-50938364 Medicago truncatula
Medtr4g123440 0.5kb upstream 0.5kb upstream 500 false chr4: 50936582-50937081 Medicago truncatula
Medtr4g123440 0.5kb downstream 0.5kb downstream 1783 true chr4: 50937082-50938864 Medicago truncatula
Medtr4g123440 0.5kb downstream 0.5kb downstream 500 false chr4: 50938365-50938864 Medicago truncatula
Medtr4g123440 1.0kb upstream 1.0kb upstream 2283 true chr4: 50936082-50938364 Medicago truncatula
Medtr4g123440 1.0kb upstream 1.0kb upstream 1000 false chr4: 50936082-50937081 Medicago truncatula
Medtr4g123440 1.0kb downstream 1.0kb downstream 2283 true chr4: 50937082-50939364 Medicago truncatula
Medtr4g123440 1.0kb downstream 1.0kb downstream 1000 false chr4: 50938365-50939364 Medicago truncatula
Medtr4g123440 2.0kb upstream 2.0kb upstream 3283 true chr4: 50935082-50938364 Medicago truncatula
Medtr4g123440 2.0kb upstream 2.0kb upstream 2000 false chr4: 50935082-50937081 Medicago truncatula
Medtr4g123440 2.0kb downstream 2.0kb downstream 3283 true chr4: 50937082-50940364 Medicago truncatula
Medtr4g123440 2.0kb downstream 2.0kb downstream 2000 false chr4: 50938365-50940364 Medicago truncatula
Medtr4g123440 5.0kb upstream 5.0kb upstream 6283 true chr4: 50932082-50938364 Medicago truncatula
Medtr4g123440 5.0kb upstream 5.0kb upstream 5000 false chr4: 50932082-50937081 Medicago truncatula
Medtr4g123440 5.0kb downstream 5.0kb downstream 6283 true chr4: 50937082-50943364 Medicago truncatula
Medtr4g123440 5.0kb downstream 5.0kb downstream 5000 false chr4: 50938365-50943364 Medicago truncatula
Medtr4g123440 10.0kb upstream 10.0kb upstream 11283 true chr4: 50927082-50938364 Medicago truncatula
Medtr4g123440 10.0kb upstream 10.0kb upstream 10000 false chr4: 50927082-50937081 Medicago truncatula
Medtr4g123440 10.0kb downstream 10.0kb downstream 11283 true chr4: 50937082-50948364 Medicago truncatula
Medtr4g123440 10.0kb downstream 10.0kb downstream 10000 false chr4: 50938365-50948364 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122303941 5265 Fabidae View MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.298       High
cufflinks 0.109        
cufflinks 0.035     Low Low
cufflinks 0.038     Low Low
cufflinks 0.204        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.228        
cufflinks 0.144        
cufflinks 0.155        

0 Strain