Gene : Medtr4g127870 M. truncatula Mt4.0v1
Defline:  (1 of 22) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Description:  ribulose bisphosphate carboxylase small chain
Genomic Order:  6816 Name:  ? Medtr4g127870
Secondary Identifier:  ? PAC:31106938
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CALVIN-PWY Medicago truncatula pathologic  
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5723 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g127870 0.5kb upstream 0.5kb upstream 1946 true chr4: 53191727-53193672 Medicago truncatula
Medtr4g127870 0.5kb upstream 0.5kb upstream 500 false chr4: 53193173-53193672 Medicago truncatula
Medtr4g127870 0.5kb downstream 0.5kb downstream 1946 true chr4: 53191227-53193172 Medicago truncatula
Medtr4g127870 0.5kb downstream 0.5kb downstream 500 false chr4: 53191227-53191726 Medicago truncatula
Medtr4g127870 1.0kb upstream 1.0kb upstream 2446 true chr4: 53191727-53194172 Medicago truncatula
Medtr4g127870 1.0kb upstream 1.0kb upstream 1000 false chr4: 53193173-53194172 Medicago truncatula
Medtr4g127870 1.0kb downstream 1.0kb downstream 2446 true chr4: 53190727-53193172 Medicago truncatula
Medtr4g127870 1.0kb downstream 1.0kb downstream 1000 false chr4: 53190727-53191726 Medicago truncatula
Medtr4g127870 2.0kb upstream 2.0kb upstream 3446 true chr4: 53191727-53195172 Medicago truncatula
Medtr4g127870 2.0kb upstream 2.0kb upstream 2000 false chr4: 53193173-53195172 Medicago truncatula
Medtr4g127870 2.0kb downstream 2.0kb downstream 3446 true chr4: 53189727-53193172 Medicago truncatula
Medtr4g127870 2.0kb downstream 2.0kb downstream 2000 false chr4: 53189727-53191726 Medicago truncatula
Medtr4g127870 5.0kb upstream 5.0kb upstream 6446 true chr4: 53191727-53198172 Medicago truncatula
Medtr4g127870 5.0kb upstream 5.0kb upstream 5000 false chr4: 53193173-53198172 Medicago truncatula
Medtr4g127870 5.0kb downstream 5.0kb downstream 6446 true chr4: 53186727-53193172 Medicago truncatula
Medtr4g127870 5.0kb downstream 5.0kb downstream 5000 false chr4: 53186727-53191726 Medicago truncatula
Medtr4g127870 10.0kb upstream 10.0kb upstream 11446 true chr4: 53191727-53203172 Medicago truncatula
Medtr4g127870 10.0kb upstream 10.0kb upstream 10000 false chr4: 53193173-53203172 Medicago truncatula
Medtr4g127870 10.0kb downstream 10.0kb downstream 11446 true chr4: 53181727-53193172 Medicago truncatula
Medtr4g127870 10.0kb downstream 10.0kb downstream 10000 false chr4: 53181727-53191726 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310075 5265 Fabidae View MSA
124070505 5270 Rosid View MSA
123742387 5271 Pentapetalae View MSA
122795056 5272 Eudicot View MSA
122048264 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 421.944     High High
cufflinks 0.443        
cufflinks 0.699        
cufflinks 155.724     High  
cufflinks 0.066       Low
cufflinks 96.02     High  
cufflinks 233.918     High  
cufflinks 0.106       Low
cufflinks 69.243     High  

0 Strain