Gene : Medtr4g129180 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR33307:SF2 - BNR/ASP-BOX REPEAT FAMILY PROTEIN Description:  alpha-rhamnosidase-like protein
Genomic Order:  6899 Name:  ? Medtr4g129180
Secondary Identifier:  ? PAC:31112276
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g129180 0.5kb upstream 0.5kb upstream 4334 true chr4: 53781753-53786086 Medicago truncatula
Medtr4g129180 0.5kb upstream 0.5kb upstream 500 false chr4: 53781753-53782252 Medicago truncatula
Medtr4g129180 0.5kb downstream 0.5kb downstream 4334 true chr4: 53782253-53786586 Medicago truncatula
Medtr4g129180 0.5kb downstream 0.5kb downstream 500 false chr4: 53786087-53786586 Medicago truncatula
Medtr4g129180 1.0kb upstream 1.0kb upstream 4834 true chr4: 53781253-53786086 Medicago truncatula
Medtr4g129180 1.0kb upstream 1.0kb upstream 1000 false chr4: 53781253-53782252 Medicago truncatula
Medtr4g129180 1.0kb downstream 1.0kb downstream 4834 true chr4: 53782253-53787086 Medicago truncatula
Medtr4g129180 1.0kb downstream 1.0kb downstream 1000 false chr4: 53786087-53787086 Medicago truncatula
Medtr4g129180 2.0kb upstream 2.0kb upstream 5834 true chr4: 53780253-53786086 Medicago truncatula
Medtr4g129180 2.0kb upstream 2.0kb upstream 2000 false chr4: 53780253-53782252 Medicago truncatula
Medtr4g129180 2.0kb downstream 2.0kb downstream 5834 true chr4: 53782253-53788086 Medicago truncatula
Medtr4g129180 2.0kb downstream 2.0kb downstream 2000 false chr4: 53786087-53788086 Medicago truncatula
Medtr4g129180 5.0kb upstream 5.0kb upstream 8834 true chr4: 53777253-53786086 Medicago truncatula
Medtr4g129180 5.0kb upstream 5.0kb upstream 5000 false chr4: 53777253-53782252 Medicago truncatula
Medtr4g129180 5.0kb downstream 5.0kb downstream 8834 true chr4: 53782253-53791086 Medicago truncatula
Medtr4g129180 5.0kb downstream 5.0kb downstream 5000 false chr4: 53786087-53791086 Medicago truncatula
Medtr4g129180 10.0kb upstream 10.0kb upstream 13834 true chr4: 53772253-53786086 Medicago truncatula
Medtr4g129180 10.0kb upstream 10.0kb upstream 10000 false chr4: 53772253-53782252 Medicago truncatula
Medtr4g129180 10.0kb downstream 10.0kb downstream 13834 true chr4: 53782253-53796086 Medicago truncatula
Medtr4g129180 10.0kb downstream 10.0kb downstream 10000 false chr4: 53786087-53796086 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304971 5265 Fabidae View MSA
124050154 5270 Rosid View MSA
123741218 5271 Pentapetalae View MSA
122786706 5272 Eudicot View MSA
122044355 5273 Angiosperm View MSA
121343996 5274 Embryophyte View MSA
123425973 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.077       Low
cufflinks 0.114        
cufflinks 0.186        
cufflinks 0.482       High
cufflinks 0.184        
cufflinks 0.197        
cufflinks 0.343        
cufflinks 0.144        
cufflinks 0.533       High

0 Strain