Gene : Medtr4g130190 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11227:SF17 - AUTOPHAGY-SPECIFIC GENE 18, ISOFORM E Description:  yeast autophagy 18 (ATG18) protein B, related protein
Genomic Order:  6952 Name:  ? Medtr4g130190
Secondary Identifier:  ? PAC:31108553
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g130190 0.5kb upstream 0.5kb upstream 6624 true chr4: 54209571-54216194 Medicago truncatula
Medtr4g130190 0.5kb upstream 0.5kb upstream 500 false chr4: 54215695-54216194 Medicago truncatula
Medtr4g130190 0.5kb downstream 0.5kb downstream 6624 true chr4: 54209071-54215694 Medicago truncatula
Medtr4g130190 0.5kb downstream 0.5kb downstream 500 false chr4: 54209071-54209570 Medicago truncatula
Medtr4g130190 1.0kb upstream 1.0kb upstream 7124 true chr4: 54209571-54216694 Medicago truncatula
Medtr4g130190 1.0kb upstream 1.0kb upstream 1000 false chr4: 54215695-54216694 Medicago truncatula
Medtr4g130190 1.0kb downstream 1.0kb downstream 7124 true chr4: 54208571-54215694 Medicago truncatula
Medtr4g130190 1.0kb downstream 1.0kb downstream 1000 false chr4: 54208571-54209570 Medicago truncatula
Medtr4g130190 2.0kb upstream 2.0kb upstream 8124 true chr4: 54209571-54217694 Medicago truncatula
Medtr4g130190 2.0kb upstream 2.0kb upstream 2000 false chr4: 54215695-54217694 Medicago truncatula
Medtr4g130190 2.0kb downstream 2.0kb downstream 8124 true chr4: 54207571-54215694 Medicago truncatula
Medtr4g130190 2.0kb downstream 2.0kb downstream 2000 false chr4: 54207571-54209570 Medicago truncatula
Medtr4g130190 5.0kb upstream 5.0kb upstream 11124 true chr4: 54209571-54220694 Medicago truncatula
Medtr4g130190 5.0kb upstream 5.0kb upstream 5000 false chr4: 54215695-54220694 Medicago truncatula
Medtr4g130190 5.0kb downstream 5.0kb downstream 11124 true chr4: 54204571-54215694 Medicago truncatula
Medtr4g130190 5.0kb downstream 5.0kb downstream 5000 false chr4: 54204571-54209570 Medicago truncatula
Medtr4g130190 10.0kb upstream 10.0kb upstream 16124 true chr4: 54209571-54225694 Medicago truncatula
Medtr4g130190 10.0kb upstream 10.0kb upstream 10000 false chr4: 54215695-54225694 Medicago truncatula
Medtr4g130190 10.0kb downstream 10.0kb downstream 16124 true chr4: 54199571-54215694 Medicago truncatula
Medtr4g130190 10.0kb downstream 10.0kb downstream 10000 false chr4: 54199571-54209570 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306822 5265 Fabidae View MSA
124061299 5270 Rosid View MSA
123737005 5271 Pentapetalae View MSA
122786119 5272 Eudicot View MSA
122046109 5273 Angiosperm View MSA
121345292 5274 Embryophyte View MSA
123426742 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.508       High
cufflinks 0.295        
cufflinks 0.412        
cufflinks 0.279        
cufflinks 0.32        
cufflinks 0.3        
cufflinks 0.382        
cufflinks 0.304        
cufflinks 0.192       Low

0 Strain