Gene : Medtr4g117330 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11088//PTHR11088:SF34 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED Description:  adenylate isopentenyltransferase
Genomic Order:  6189 Name:  ? Medtr4g117330
Secondary Identifier:  ? PAC:31106591
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-2681 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g117330 0.5kb upstream 0.5kb upstream 1617 true chr4: 48643351-48644967 Medicago truncatula
Medtr4g117330 0.5kb upstream 0.5kb upstream 500 false chr4: 48643351-48643850 Medicago truncatula
Medtr4g117330 0.5kb downstream 0.5kb downstream 1617 true chr4: 48643851-48645467 Medicago truncatula
Medtr4g117330 0.5kb downstream 0.5kb downstream 500 false chr4: 48644968-48645467 Medicago truncatula
Medtr4g117330 1.0kb upstream 1.0kb upstream 2117 true chr4: 48642851-48644967 Medicago truncatula
Medtr4g117330 1.0kb upstream 1.0kb upstream 1000 false chr4: 48642851-48643850 Medicago truncatula
Medtr4g117330 1.0kb downstream 1.0kb downstream 2117 true chr4: 48643851-48645967 Medicago truncatula
Medtr4g117330 1.0kb downstream 1.0kb downstream 1000 false chr4: 48644968-48645967 Medicago truncatula
Medtr4g117330 2.0kb upstream 2.0kb upstream 3117 true chr4: 48641851-48644967 Medicago truncatula
Medtr4g117330 2.0kb upstream 2.0kb upstream 2000 false chr4: 48641851-48643850 Medicago truncatula
Medtr4g117330 2.0kb downstream 2.0kb downstream 3117 true chr4: 48643851-48646967 Medicago truncatula
Medtr4g117330 2.0kb downstream 2.0kb downstream 2000 false chr4: 48644968-48646967 Medicago truncatula
Medtr4g117330 5.0kb upstream 5.0kb upstream 6117 true chr4: 48638851-48644967 Medicago truncatula
Medtr4g117330 5.0kb upstream 5.0kb upstream 5000 false chr4: 48638851-48643850 Medicago truncatula
Medtr4g117330 5.0kb downstream 5.0kb downstream 6117 true chr4: 48643851-48649967 Medicago truncatula
Medtr4g117330 5.0kb downstream 5.0kb downstream 5000 false chr4: 48644968-48649967 Medicago truncatula
Medtr4g117330 10.0kb upstream 10.0kb upstream 11117 true chr4: 48633851-48644967 Medicago truncatula
Medtr4g117330 10.0kb upstream 10.0kb upstream 10000 false chr4: 48633851-48643850 Medicago truncatula
Medtr4g117330 10.0kb downstream 10.0kb downstream 11117 true chr4: 48643851-48654967 Medicago truncatula
Medtr4g117330 10.0kb downstream 10.0kb downstream 10000 false chr4: 48644968-48654967 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313090 5265 Fabidae View MSA
124067788 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.375        
cufflinks 0.075       Low
cufflinks 0.478        
cufflinks 1.231        
cufflinks 0.099       Low
cufflinks 0.711        
cufflinks 1.079        
cufflinks 0.094       Low
cufflinks 1.131        

0 Strain