Gene : Medtr4g118640 M. truncatula Mt4.0v1
Defline:  (1 of 5) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Description:  1-deoxy-D-xylulose-5-phosphate synthase
Genomic Order:  6263 Name:  ? Medtr4g118640
Secondary Identifier:  ? PAC:31113039
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7560 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g118640 0.5kb upstream 0.5kb upstream 4863 true chr4: 49144564-49149426 Medicago truncatula
Medtr4g118640 0.5kb upstream 0.5kb upstream 500 false chr4: 49144564-49145063 Medicago truncatula
Medtr4g118640 0.5kb downstream 0.5kb downstream 4863 true chr4: 49145064-49149926 Medicago truncatula
Medtr4g118640 0.5kb downstream 0.5kb downstream 500 false chr4: 49149427-49149926 Medicago truncatula
Medtr4g118640 1.0kb upstream 1.0kb upstream 5363 true chr4: 49144064-49149426 Medicago truncatula
Medtr4g118640 1.0kb upstream 1.0kb upstream 1000 false chr4: 49144064-49145063 Medicago truncatula
Medtr4g118640 1.0kb downstream 1.0kb downstream 5363 true chr4: 49145064-49150426 Medicago truncatula
Medtr4g118640 1.0kb downstream 1.0kb downstream 1000 false chr4: 49149427-49150426 Medicago truncatula
Medtr4g118640 2.0kb upstream 2.0kb upstream 6363 true chr4: 49143064-49149426 Medicago truncatula
Medtr4g118640 2.0kb upstream 2.0kb upstream 2000 false chr4: 49143064-49145063 Medicago truncatula
Medtr4g118640 2.0kb downstream 2.0kb downstream 6363 true chr4: 49145064-49151426 Medicago truncatula
Medtr4g118640 2.0kb downstream 2.0kb downstream 2000 false chr4: 49149427-49151426 Medicago truncatula
Medtr4g118640 5.0kb upstream 5.0kb upstream 9363 true chr4: 49140064-49149426 Medicago truncatula
Medtr4g118640 5.0kb upstream 5.0kb upstream 5000 false chr4: 49140064-49145063 Medicago truncatula
Medtr4g118640 5.0kb downstream 5.0kb downstream 9363 true chr4: 49145064-49154426 Medicago truncatula
Medtr4g118640 5.0kb downstream 5.0kb downstream 5000 false chr4: 49149427-49154426 Medicago truncatula
Medtr4g118640 10.0kb upstream 10.0kb upstream 14363 true chr4: 49135064-49149426 Medicago truncatula
Medtr4g118640 10.0kb upstream 10.0kb upstream 10000 false chr4: 49135064-49145063 Medicago truncatula
Medtr4g118640 10.0kb downstream 10.0kb downstream 14363 true chr4: 49145064-49159426 Medicago truncatula
Medtr4g118640 10.0kb downstream 10.0kb downstream 10000 false chr4: 49149427-49159426 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310498 5265 Fabidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.827        
cufflinks 20.761     High High
cufflinks 15.09     High  
cufflinks 6.239        
cufflinks 23.756     High High
cufflinks 2.849        
cufflinks 2.562       Low
cufflinks 19.711     High High
cufflinks 3.362        

0 Strain