Gene : Medtr4g119880 M. truncatula Mt4.0v1
Defline:  (1 of 16) 2.4.2.39 - Xyloglucan 6-xylosyltransferase / Xyloglucan 6-alpha-D-xylosyltransferase Description:  xyloglucan xylosyltransferase
Genomic Order:  6344 Name:  ? Medtr4g119880
Secondary Identifier:  ? PAC:31114558
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5936 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g119880 0.5kb upstream 0.5kb upstream 2438 true chr4: 49677673-49680110 Medicago truncatula
Medtr4g119880 0.5kb upstream 0.5kb upstream 500 false chr4: 49677673-49678172 Medicago truncatula
Medtr4g119880 0.5kb downstream 0.5kb downstream 2438 true chr4: 49678173-49680610 Medicago truncatula
Medtr4g119880 0.5kb downstream 0.5kb downstream 500 false chr4: 49680111-49680610 Medicago truncatula
Medtr4g119880 1.0kb upstream 1.0kb upstream 2938 true chr4: 49677173-49680110 Medicago truncatula
Medtr4g119880 1.0kb upstream 1.0kb upstream 1000 false chr4: 49677173-49678172 Medicago truncatula
Medtr4g119880 1.0kb downstream 1.0kb downstream 2938 true chr4: 49678173-49681110 Medicago truncatula
Medtr4g119880 1.0kb downstream 1.0kb downstream 1000 false chr4: 49680111-49681110 Medicago truncatula
Medtr4g119880 2.0kb upstream 2.0kb upstream 3938 true chr4: 49676173-49680110 Medicago truncatula
Medtr4g119880 2.0kb upstream 2.0kb upstream 2000 false chr4: 49676173-49678172 Medicago truncatula
Medtr4g119880 2.0kb downstream 2.0kb downstream 3938 true chr4: 49678173-49682110 Medicago truncatula
Medtr4g119880 2.0kb downstream 2.0kb downstream 2000 false chr4: 49680111-49682110 Medicago truncatula
Medtr4g119880 5.0kb upstream 5.0kb upstream 6938 true chr4: 49673173-49680110 Medicago truncatula
Medtr4g119880 5.0kb upstream 5.0kb upstream 5000 false chr4: 49673173-49678172 Medicago truncatula
Medtr4g119880 5.0kb downstream 5.0kb downstream 6938 true chr4: 49678173-49685110 Medicago truncatula
Medtr4g119880 5.0kb downstream 5.0kb downstream 5000 false chr4: 49680111-49685110 Medicago truncatula
Medtr4g119880 10.0kb upstream 10.0kb upstream 11938 true chr4: 49668173-49680110 Medicago truncatula
Medtr4g119880 10.0kb upstream 10.0kb upstream 10000 false chr4: 49668173-49678172 Medicago truncatula
Medtr4g119880 10.0kb downstream 10.0kb downstream 11938 true chr4: 49678173-49690110 Medicago truncatula
Medtr4g119880 10.0kb downstream 10.0kb downstream 10000 false chr4: 49680111-49690110 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311816 5265 Fabidae View MSA
124064369 5270 Rosid View MSA
123736946 5271 Pentapetalae View MSA
122789380 5272 Eudicot View MSA
122042255 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.087     High High
cufflinks 12.5     High  
cufflinks 16.736     High  
cufflinks 6.057       Low
cufflinks 14.234     High  
cufflinks 12.993     High  
cufflinks 15.281     High  
cufflinks 8.24       Low
cufflinks 33.068     High High

0 Strain