Gene : Medtr4g120360 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Description:  TPR repeat protein
Genomic Order:  6375 Name:  ? Medtr4g120360
Secondary Identifier:  ? PAC:31112601
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g120360 0.5kb upstream 0.5kb upstream 3655 true chr4: 49897647-49901301 Medicago truncatula
Medtr4g120360 0.5kb upstream 0.5kb upstream 500 false chr4: 49897647-49898146 Medicago truncatula
Medtr4g120360 0.5kb downstream 0.5kb downstream 3655 true chr4: 49898147-49901801 Medicago truncatula
Medtr4g120360 0.5kb downstream 0.5kb downstream 500 false chr4: 49901302-49901801 Medicago truncatula
Medtr4g120360 1.0kb upstream 1.0kb upstream 4155 true chr4: 49897147-49901301 Medicago truncatula
Medtr4g120360 1.0kb upstream 1.0kb upstream 1000 false chr4: 49897147-49898146 Medicago truncatula
Medtr4g120360 1.0kb downstream 1.0kb downstream 4155 true chr4: 49898147-49902301 Medicago truncatula
Medtr4g120360 1.0kb downstream 1.0kb downstream 1000 false chr4: 49901302-49902301 Medicago truncatula
Medtr4g120360 2.0kb upstream 2.0kb upstream 5155 true chr4: 49896147-49901301 Medicago truncatula
Medtr4g120360 2.0kb upstream 2.0kb upstream 2000 false chr4: 49896147-49898146 Medicago truncatula
Medtr4g120360 2.0kb downstream 2.0kb downstream 5155 true chr4: 49898147-49903301 Medicago truncatula
Medtr4g120360 2.0kb downstream 2.0kb downstream 2000 false chr4: 49901302-49903301 Medicago truncatula
Medtr4g120360 5.0kb upstream 5.0kb upstream 8155 true chr4: 49893147-49901301 Medicago truncatula
Medtr4g120360 5.0kb upstream 5.0kb upstream 5000 false chr4: 49893147-49898146 Medicago truncatula
Medtr4g120360 5.0kb downstream 5.0kb downstream 8155 true chr4: 49898147-49906301 Medicago truncatula
Medtr4g120360 5.0kb downstream 5.0kb downstream 5000 false chr4: 49901302-49906301 Medicago truncatula
Medtr4g120360 10.0kb upstream 10.0kb upstream 13155 true chr4: 49888147-49901301 Medicago truncatula
Medtr4g120360 10.0kb upstream 10.0kb upstream 10000 false chr4: 49888147-49898146 Medicago truncatula
Medtr4g120360 10.0kb downstream 10.0kb downstream 13155 true chr4: 49898147-49911301 Medicago truncatula
Medtr4g120360 10.0kb downstream 10.0kb downstream 10000 false chr4: 49901302-49911301 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
122303253 5265 Fabidae View MSA
124069433 5270 Rosid View MSA
123746924 5271 Pentapetalae View MSA
122794448 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.189        
cufflinks 7.647        
cufflinks 6.782        
cufflinks 15.399     High High
cufflinks 7.071        
cufflinks 10.548     High  
cufflinks 11.974     High  
cufflinks 5.164       Low
cufflinks 14.796     High High

0 Strain