Gene : Medtr5g024640 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31651:SF3 - AUXIN EFFLUX CARRIER FAMILY PROTEIN Description:  auxin efflux carrier family protein
Genomic Order:  1436 Name:  ? Medtr5g024640
Secondary Identifier:  ? PAC:31087453
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g024640 0.5kb upstream 0.5kb upstream 6551 true chr5: 9895767-9902317 Medicago truncatula
Medtr5g024640 0.5kb upstream 0.5kb upstream 500 false chr5: 9901818-9902317 Medicago truncatula
Medtr5g024640 0.5kb downstream 0.5kb downstream 6551 true chr5: 9895267-9901817 Medicago truncatula
Medtr5g024640 0.5kb downstream 0.5kb downstream 500 false chr5: 9895267-9895766 Medicago truncatula
Medtr5g024640 1.0kb upstream 1.0kb upstream 7051 true chr5: 9895767-9902817 Medicago truncatula
Medtr5g024640 1.0kb upstream 1.0kb upstream 1000 false chr5: 9901818-9902817 Medicago truncatula
Medtr5g024640 1.0kb downstream 1.0kb downstream 7051 true chr5: 9894767-9901817 Medicago truncatula
Medtr5g024640 1.0kb downstream 1.0kb downstream 1000 false chr5: 9894767-9895766 Medicago truncatula
Medtr5g024640 2.0kb upstream 2.0kb upstream 8051 true chr5: 9895767-9903817 Medicago truncatula
Medtr5g024640 2.0kb upstream 2.0kb upstream 2000 false chr5: 9901818-9903817 Medicago truncatula
Medtr5g024640 2.0kb downstream 2.0kb downstream 8051 true chr5: 9893767-9901817 Medicago truncatula
Medtr5g024640 2.0kb downstream 2.0kb downstream 2000 false chr5: 9893767-9895766 Medicago truncatula
Medtr5g024640 5.0kb upstream 5.0kb upstream 11051 true chr5: 9895767-9906817 Medicago truncatula
Medtr5g024640 5.0kb upstream 5.0kb upstream 5000 false chr5: 9901818-9906817 Medicago truncatula
Medtr5g024640 5.0kb downstream 5.0kb downstream 11051 true chr5: 9890767-9901817 Medicago truncatula
Medtr5g024640 5.0kb downstream 5.0kb downstream 5000 false chr5: 9890767-9895766 Medicago truncatula
Medtr5g024640 10.0kb upstream 10.0kb upstream 16051 true chr5: 9895767-9911817 Medicago truncatula
Medtr5g024640 10.0kb upstream 10.0kb upstream 10000 false chr5: 9901818-9911817 Medicago truncatula
Medtr5g024640 10.0kb downstream 10.0kb downstream 16051 true chr5: 9885767-9901817 Medicago truncatula
Medtr5g024640 10.0kb downstream 10.0kb downstream 10000 false chr5: 9885767-9895766 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122263820 5265 Fabidae Singleton cluster - no MSA
124065077 5270 Rosid View MSA
123745706 5271 Pentapetalae View MSA
122790456 5272 Eudicot View MSA
122045541 5273 Angiosperm View MSA
123429004 5275 Viridiplantae View MSA
121349316 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.82        
cufflinks 3.456        
cufflinks 3.531        
cufflinks 1.457        
cufflinks 2.073        
cufflinks 1.618        
cufflinks 6.126       High
cufflinks 2.194        
cufflinks 1.115       Low

0 Strain