Gene : Medtr5g019910 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11618//PTHR11618:SF26 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED Description:  transcription factor IIB
Genomic Order:  1092 Name:  ? Medtr5g019910
Secondary Identifier:  ? PAC:31086306
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g019910 0.5kb upstream 0.5kb upstream 4757 true chr5: 7553476-7558232 Medicago truncatula
Medtr5g019910 0.5kb upstream 0.5kb upstream 500 false chr5: 7553476-7553975 Medicago truncatula
Medtr5g019910 0.5kb downstream 0.5kb downstream 4757 true chr5: 7553976-7558732 Medicago truncatula
Medtr5g019910 0.5kb downstream 0.5kb downstream 500 false chr5: 7558233-7558732 Medicago truncatula
Medtr5g019910 1.0kb upstream 1.0kb upstream 5257 true chr5: 7552976-7558232 Medicago truncatula
Medtr5g019910 1.0kb upstream 1.0kb upstream 1000 false chr5: 7552976-7553975 Medicago truncatula
Medtr5g019910 1.0kb downstream 1.0kb downstream 5257 true chr5: 7553976-7559232 Medicago truncatula
Medtr5g019910 1.0kb downstream 1.0kb downstream 1000 false chr5: 7558233-7559232 Medicago truncatula
Medtr5g019910 2.0kb upstream 2.0kb upstream 6257 true chr5: 7551976-7558232 Medicago truncatula
Medtr5g019910 2.0kb upstream 2.0kb upstream 2000 false chr5: 7551976-7553975 Medicago truncatula
Medtr5g019910 2.0kb downstream 2.0kb downstream 6257 true chr5: 7553976-7560232 Medicago truncatula
Medtr5g019910 2.0kb downstream 2.0kb downstream 2000 false chr5: 7558233-7560232 Medicago truncatula
Medtr5g019910 5.0kb upstream 5.0kb upstream 9257 true chr5: 7548976-7558232 Medicago truncatula
Medtr5g019910 5.0kb upstream 5.0kb upstream 5000 false chr5: 7548976-7553975 Medicago truncatula
Medtr5g019910 5.0kb downstream 5.0kb downstream 9257 true chr5: 7553976-7563232 Medicago truncatula
Medtr5g019910 5.0kb downstream 5.0kb downstream 5000 false chr5: 7558233-7563232 Medicago truncatula
Medtr5g019910 10.0kb upstream 10.0kb upstream 14257 true chr5: 7543976-7558232 Medicago truncatula
Medtr5g019910 10.0kb upstream 10.0kb upstream 10000 false chr5: 7543976-7553975 Medicago truncatula
Medtr5g019910 10.0kb downstream 10.0kb downstream 14257 true chr5: 7553976-7568232 Medicago truncatula
Medtr5g019910 10.0kb downstream 10.0kb downstream 10000 false chr5: 7558233-7568232 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313147 5265 Fabidae View MSA
124063096 5270 Rosid View MSA
123741004 5271 Pentapetalae View MSA
122785820 5272 Eudicot View MSA
122046591 5273 Angiosperm View MSA
121310628 5274 Embryophyte View MSA
123348063 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56        
cufflinks 1.423        
cufflinks 1.599        
cufflinks 0.949       Low
cufflinks 1.952       High
cufflinks 0.957        
cufflinks 0.848       Low
cufflinks 1.201        
cufflinks 1.293        

0 Strain