Gene : Medtr5g019860 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  1088 Name:  ? Medtr5g019860
Secondary Identifier:  ? PAC:31086491
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g019860 0.5kb upstream 0.5kb upstream 2243 true chr5: 7530993-7533235 Medicago truncatula
Medtr5g019860 0.5kb upstream 0.5kb upstream 500 false chr5: 7530993-7531492 Medicago truncatula
Medtr5g019860 0.5kb downstream 0.5kb downstream 2243 true chr5: 7531493-7533735 Medicago truncatula
Medtr5g019860 0.5kb downstream 0.5kb downstream 500 false chr5: 7533236-7533735 Medicago truncatula
Medtr5g019860 1.0kb upstream 1.0kb upstream 2743 true chr5: 7530493-7533235 Medicago truncatula
Medtr5g019860 1.0kb upstream 1.0kb upstream 1000 false chr5: 7530493-7531492 Medicago truncatula
Medtr5g019860 1.0kb downstream 1.0kb downstream 2743 true chr5: 7531493-7534235 Medicago truncatula
Medtr5g019860 1.0kb downstream 1.0kb downstream 1000 false chr5: 7533236-7534235 Medicago truncatula
Medtr5g019860 2.0kb upstream 2.0kb upstream 3743 true chr5: 7529493-7533235 Medicago truncatula
Medtr5g019860 2.0kb upstream 2.0kb upstream 2000 false chr5: 7529493-7531492 Medicago truncatula
Medtr5g019860 2.0kb downstream 2.0kb downstream 3743 true chr5: 7531493-7535235 Medicago truncatula
Medtr5g019860 2.0kb downstream 2.0kb downstream 2000 false chr5: 7533236-7535235 Medicago truncatula
Medtr5g019860 5.0kb upstream 5.0kb upstream 6743 true chr5: 7526493-7533235 Medicago truncatula
Medtr5g019860 5.0kb upstream 5.0kb upstream 5000 false chr5: 7526493-7531492 Medicago truncatula
Medtr5g019860 5.0kb downstream 5.0kb downstream 6743 true chr5: 7531493-7538235 Medicago truncatula
Medtr5g019860 5.0kb downstream 5.0kb downstream 5000 false chr5: 7533236-7538235 Medicago truncatula
Medtr5g019860 10.0kb upstream 10.0kb upstream 11743 true chr5: 7521493-7533235 Medicago truncatula
Medtr5g019860 10.0kb upstream 10.0kb upstream 10000 false chr5: 7521493-7531492 Medicago truncatula
Medtr5g019860 10.0kb downstream 10.0kb downstream 11743 true chr5: 7531493-7543235 Medicago truncatula
Medtr5g019860 10.0kb downstream 10.0kb downstream 10000 false chr5: 7533236-7543235 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309942 5265 Fabidae View MSA
124062138 5270 Rosid View MSA
123738772 5271 Pentapetalae View MSA
122795104 5272 Eudicot View MSA
122042665 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121309997 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.244        
cufflinks 2.293        
cufflinks 3.057        
cufflinks 1.527        
cufflinks 4.759        
cufflinks 0.035     Low Low
cufflinks 1.391        
cufflinks 2.822        
cufflinks 1.686        

0 Strain