Gene : Medtr5g020990 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR23070//PTHR23070:SF12 - BCS1 AAA-TYPE ATPASE Description:  P-loop nucleoside triphosphate hydrolase superfamily protein
Genomic Order:  1171 Name:  ? Medtr5g020990
Secondary Identifier:  ? PAC:31090483
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g020990 0.5kb upstream 0.5kb upstream 3188 true chr5: 8050885-8054072 Medicago truncatula
Medtr5g020990 0.5kb upstream 0.5kb upstream 500 false chr5: 8050885-8051384 Medicago truncatula
Medtr5g020990 0.5kb downstream 0.5kb downstream 3188 true chr5: 8051385-8054572 Medicago truncatula
Medtr5g020990 0.5kb downstream 0.5kb downstream 500 false chr5: 8054073-8054572 Medicago truncatula
Medtr5g020990 1.0kb upstream 1.0kb upstream 3688 true chr5: 8050385-8054072 Medicago truncatula
Medtr5g020990 1.0kb upstream 1.0kb upstream 1000 false chr5: 8050385-8051384 Medicago truncatula
Medtr5g020990 1.0kb downstream 1.0kb downstream 3688 true chr5: 8051385-8055072 Medicago truncatula
Medtr5g020990 1.0kb downstream 1.0kb downstream 1000 false chr5: 8054073-8055072 Medicago truncatula
Medtr5g020990 2.0kb upstream 2.0kb upstream 4688 true chr5: 8049385-8054072 Medicago truncatula
Medtr5g020990 2.0kb upstream 2.0kb upstream 2000 false chr5: 8049385-8051384 Medicago truncatula
Medtr5g020990 2.0kb downstream 2.0kb downstream 4688 true chr5: 8051385-8056072 Medicago truncatula
Medtr5g020990 2.0kb downstream 2.0kb downstream 2000 false chr5: 8054073-8056072 Medicago truncatula
Medtr5g020990 5.0kb upstream 5.0kb upstream 7688 true chr5: 8046385-8054072 Medicago truncatula
Medtr5g020990 5.0kb upstream 5.0kb upstream 5000 false chr5: 8046385-8051384 Medicago truncatula
Medtr5g020990 5.0kb downstream 5.0kb downstream 7688 true chr5: 8051385-8059072 Medicago truncatula
Medtr5g020990 5.0kb downstream 5.0kb downstream 5000 false chr5: 8054073-8059072 Medicago truncatula
Medtr5g020990 10.0kb upstream 10.0kb upstream 12688 true chr5: 8041385-8054072 Medicago truncatula
Medtr5g020990 10.0kb upstream 10.0kb upstream 10000 false chr5: 8041385-8051384 Medicago truncatula
Medtr5g020990 10.0kb downstream 10.0kb downstream 12688 true chr5: 8051385-8064072 Medicago truncatula
Medtr5g020990 10.0kb downstream 10.0kb downstream 10000 false chr5: 8054073-8064072 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121657512 5273 Angiosperm View MSA
122297410 5265 Fabidae View MSA
124039441 5270 Rosid View MSA
123611319 5271 Pentapetalae View MSA
122645890 5272 Eudicot View MSA
120929553 5274 Embryophyte View MSA
123428466 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.721     High High
cufflinks 8.884        
cufflinks 6.032        
cufflinks 4.372       Low
cufflinks 8.593        
cufflinks 7.424        
cufflinks 12.326     High  
cufflinks 6.478        
cufflinks 15.367     High  

0 Strain