Gene : Medtr5g020960 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR22814//PTHR22814:SF132 - COPPER TRANSPORT PROTEIN ATOX1-RELATED Description:  heavy-metal-associated domain protein
Genomic Order:  1169 Name:  ? Medtr5g020960
Secondary Identifier:  ? PAC:31089862
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g020960 0.5kb upstream 0.5kb upstream 1233 true chr5: 8035846-8037078 Medicago truncatula
Medtr5g020960 0.5kb upstream 0.5kb upstream 500 false chr5: 8035846-8036345 Medicago truncatula
Medtr5g020960 0.5kb downstream 0.5kb downstream 1233 true chr5: 8036346-8037578 Medicago truncatula
Medtr5g020960 0.5kb downstream 0.5kb downstream 500 false chr5: 8037079-8037578 Medicago truncatula
Medtr5g020960 1.0kb upstream 1.0kb upstream 1733 true chr5: 8035346-8037078 Medicago truncatula
Medtr5g020960 1.0kb upstream 1.0kb upstream 1000 false chr5: 8035346-8036345 Medicago truncatula
Medtr5g020960 1.0kb downstream 1.0kb downstream 1733 true chr5: 8036346-8038078 Medicago truncatula
Medtr5g020960 1.0kb downstream 1.0kb downstream 1000 false chr5: 8037079-8038078 Medicago truncatula
Medtr5g020960 2.0kb upstream 2.0kb upstream 2733 true chr5: 8034346-8037078 Medicago truncatula
Medtr5g020960 2.0kb upstream 2.0kb upstream 2000 false chr5: 8034346-8036345 Medicago truncatula
Medtr5g020960 2.0kb downstream 2.0kb downstream 2733 true chr5: 8036346-8039078 Medicago truncatula
Medtr5g020960 2.0kb downstream 2.0kb downstream 2000 false chr5: 8037079-8039078 Medicago truncatula
Medtr5g020960 5.0kb upstream 5.0kb upstream 5733 true chr5: 8031346-8037078 Medicago truncatula
Medtr5g020960 5.0kb upstream 5.0kb upstream 5000 false chr5: 8031346-8036345 Medicago truncatula
Medtr5g020960 5.0kb downstream 5.0kb downstream 5733 true chr5: 8036346-8042078 Medicago truncatula
Medtr5g020960 5.0kb downstream 5.0kb downstream 5000 false chr5: 8037079-8042078 Medicago truncatula
Medtr5g020960 10.0kb upstream 10.0kb upstream 10733 true chr5: 8026346-8037078 Medicago truncatula
Medtr5g020960 10.0kb upstream 10.0kb upstream 10000 false chr5: 8026346-8036345 Medicago truncatula
Medtr5g020960 10.0kb downstream 10.0kb downstream 10733 true chr5: 8036346-8047078 Medicago truncatula
Medtr5g020960 10.0kb downstream 10.0kb downstream 10000 false chr5: 8037079-8047078 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299838 5265 Fabidae View MSA
124070077 5270 Rosid View MSA
123749525 5271 Pentapetalae View MSA
122797492 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.049     Low  
cufflinks 0.018     Low Low
cufflinks 0.083        
cufflinks 1.042       High
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.327        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.132        

0 Strain