Gene : Medtr5g026030 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13069:SF8 - 2-OXOGLUTARATE AND FE-DEPENDENT OXYGENASE FAMILY PROTEIN Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  1546 Name:  ? Medtr5g026030
Secondary Identifier:  ? PAC:31089234
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g026030 0.5kb upstream 0.5kb upstream 5968 true chr5: 10667234-10673201 Medicago truncatula
Medtr5g026030 0.5kb upstream 0.5kb upstream 500 false chr5: 10667234-10667733 Medicago truncatula
Medtr5g026030 0.5kb downstream 0.5kb downstream 5968 true chr5: 10667734-10673701 Medicago truncatula
Medtr5g026030 0.5kb downstream 0.5kb downstream 500 false chr5: 10673202-10673701 Medicago truncatula
Medtr5g026030 1.0kb upstream 1.0kb upstream 6468 true chr5: 10666734-10673201 Medicago truncatula
Medtr5g026030 1.0kb upstream 1.0kb upstream 1000 false chr5: 10666734-10667733 Medicago truncatula
Medtr5g026030 1.0kb downstream 1.0kb downstream 6468 true chr5: 10667734-10674201 Medicago truncatula
Medtr5g026030 1.0kb downstream 1.0kb downstream 1000 false chr5: 10673202-10674201 Medicago truncatula
Medtr5g026030 2.0kb upstream 2.0kb upstream 7468 true chr5: 10665734-10673201 Medicago truncatula
Medtr5g026030 2.0kb upstream 2.0kb upstream 2000 false chr5: 10665734-10667733 Medicago truncatula
Medtr5g026030 2.0kb downstream 2.0kb downstream 7468 true chr5: 10667734-10675201 Medicago truncatula
Medtr5g026030 2.0kb downstream 2.0kb downstream 2000 false chr5: 10673202-10675201 Medicago truncatula
Medtr5g026030 5.0kb upstream 5.0kb upstream 10468 true chr5: 10662734-10673201 Medicago truncatula
Medtr5g026030 5.0kb upstream 5.0kb upstream 5000 false chr5: 10662734-10667733 Medicago truncatula
Medtr5g026030 5.0kb downstream 5.0kb downstream 10468 true chr5: 10667734-10678201 Medicago truncatula
Medtr5g026030 5.0kb downstream 5.0kb downstream 5000 false chr5: 10673202-10678201 Medicago truncatula
Medtr5g026030 10.0kb upstream 10.0kb upstream 15468 true chr5: 10657734-10673201 Medicago truncatula
Medtr5g026030 10.0kb upstream 10.0kb upstream 10000 false chr5: 10657734-10667733 Medicago truncatula
Medtr5g026030 10.0kb downstream 10.0kb downstream 15468 true chr5: 10667734-10683201 Medicago truncatula
Medtr5g026030 10.0kb downstream 10.0kb downstream 10000 false chr5: 10673202-10683201 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299898 5265 Fabidae View MSA
124068599 5270 Rosid View MSA
123740892 5271 Pentapetalae View MSA
122793671 5272 Eudicot View MSA
122046991 5273 Angiosperm View MSA
121347521 5274 Embryophyte View MSA
123425237 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.596        
cufflinks 0.683        
cufflinks 0.87        
cufflinks 0.281       Low
cufflinks 1.056       High
cufflinks 0.178       Low
cufflinks 0.517        
cufflinks 0.801        
cufflinks 0.36        

0 Strain