Gene : Medtr5g028000 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13149 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 Description:  E2F/DP family winged-helix DNA-binding domain protein
Genomic Order:  1679 Name:  ? Medtr5g028000
Secondary Identifier:  ? PAC:31086667
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g028000 0.5kb upstream 0.5kb upstream 4807 true chr5: 11698772-11703578 Medicago truncatula
Medtr5g028000 0.5kb upstream 0.5kb upstream 500 false chr5: 11698772-11699271 Medicago truncatula
Medtr5g028000 0.5kb downstream 0.5kb downstream 4807 true chr5: 11699272-11704078 Medicago truncatula
Medtr5g028000 0.5kb downstream 0.5kb downstream 500 false chr5: 11703579-11704078 Medicago truncatula
Medtr5g028000 1.0kb upstream 1.0kb upstream 5307 true chr5: 11698272-11703578 Medicago truncatula
Medtr5g028000 1.0kb upstream 1.0kb upstream 1000 false chr5: 11698272-11699271 Medicago truncatula
Medtr5g028000 1.0kb downstream 1.0kb downstream 5307 true chr5: 11699272-11704578 Medicago truncatula
Medtr5g028000 1.0kb downstream 1.0kb downstream 1000 false chr5: 11703579-11704578 Medicago truncatula
Medtr5g028000 2.0kb upstream 2.0kb upstream 6307 true chr5: 11697272-11703578 Medicago truncatula
Medtr5g028000 2.0kb upstream 2.0kb upstream 2000 false chr5: 11697272-11699271 Medicago truncatula
Medtr5g028000 2.0kb downstream 2.0kb downstream 6307 true chr5: 11699272-11705578 Medicago truncatula
Medtr5g028000 2.0kb downstream 2.0kb downstream 2000 false chr5: 11703579-11705578 Medicago truncatula
Medtr5g028000 5.0kb upstream 5.0kb upstream 9307 true chr5: 11694272-11703578 Medicago truncatula
Medtr5g028000 5.0kb upstream 5.0kb upstream 5000 false chr5: 11694272-11699271 Medicago truncatula
Medtr5g028000 5.0kb downstream 5.0kb downstream 9307 true chr5: 11699272-11708578 Medicago truncatula
Medtr5g028000 5.0kb downstream 5.0kb downstream 5000 false chr5: 11703579-11708578 Medicago truncatula
Medtr5g028000 10.0kb upstream 10.0kb upstream 14307 true chr5: 11689272-11703578 Medicago truncatula
Medtr5g028000 10.0kb upstream 10.0kb upstream 10000 false chr5: 11689272-11699271 Medicago truncatula
Medtr5g028000 10.0kb downstream 10.0kb downstream 14307 true chr5: 11699272-11713578 Medicago truncatula
Medtr5g028000 10.0kb downstream 10.0kb downstream 10000 false chr5: 11703579-11713578 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305240 5265 Fabidae View MSA
124065529 5270 Rosid View MSA
123740104 5271 Pentapetalae View MSA
122789315 5272 Eudicot View MSA
122043076 5273 Angiosperm View MSA
121347128 5274 Embryophyte View MSA
123424055 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.818       Low
cufflinks 2.64        
cufflinks 2.311        
cufflinks 2.03        
cufflinks 2.833        
cufflinks 1.93        
cufflinks 4.094       High
cufflinks 2.29        
cufflinks 2.345        

0 Strain