Gene : Medtr5g022300 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.6.99.1 - NADPH dehydrogenase / NADPH diaphorase Description:  leaf ferredoxin-NADP reductase
Genomic Order:  1254 Name:  ? Medtr5g022300
Secondary Identifier:  ? PAC:31091895
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g022300 0.5kb upstream 0.5kb upstream 4456 true chr5: 8788671-8793126 Medicago truncatula
Medtr5g022300 0.5kb upstream 0.5kb upstream 500 false chr5: 8788671-8789170 Medicago truncatula
Medtr5g022300 0.5kb downstream 0.5kb downstream 4456 true chr5: 8789171-8793626 Medicago truncatula
Medtr5g022300 0.5kb downstream 0.5kb downstream 500 false chr5: 8793127-8793626 Medicago truncatula
Medtr5g022300 1.0kb upstream 1.0kb upstream 4956 true chr5: 8788171-8793126 Medicago truncatula
Medtr5g022300 1.0kb upstream 1.0kb upstream 1000 false chr5: 8788171-8789170 Medicago truncatula
Medtr5g022300 1.0kb downstream 1.0kb downstream 4956 true chr5: 8789171-8794126 Medicago truncatula
Medtr5g022300 1.0kb downstream 1.0kb downstream 1000 false chr5: 8793127-8794126 Medicago truncatula
Medtr5g022300 2.0kb upstream 2.0kb upstream 5956 true chr5: 8787171-8793126 Medicago truncatula
Medtr5g022300 2.0kb upstream 2.0kb upstream 2000 false chr5: 8787171-8789170 Medicago truncatula
Medtr5g022300 2.0kb downstream 2.0kb downstream 5956 true chr5: 8789171-8795126 Medicago truncatula
Medtr5g022300 2.0kb downstream 2.0kb downstream 2000 false chr5: 8793127-8795126 Medicago truncatula
Medtr5g022300 5.0kb upstream 5.0kb upstream 8956 true chr5: 8784171-8793126 Medicago truncatula
Medtr5g022300 5.0kb upstream 5.0kb upstream 5000 false chr5: 8784171-8789170 Medicago truncatula
Medtr5g022300 5.0kb downstream 5.0kb downstream 8956 true chr5: 8789171-8798126 Medicago truncatula
Medtr5g022300 5.0kb downstream 5.0kb downstream 5000 false chr5: 8793127-8798126 Medicago truncatula
Medtr5g022300 10.0kb upstream 10.0kb upstream 13956 true chr5: 8779171-8793126 Medicago truncatula
Medtr5g022300 10.0kb upstream 10.0kb upstream 10000 false chr5: 8779171-8789170 Medicago truncatula
Medtr5g022300 10.0kb downstream 10.0kb downstream 13956 true chr5: 8789171-8803126 Medicago truncatula
Medtr5g022300 10.0kb downstream 10.0kb downstream 10000 false chr5: 8793127-8803126 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302692 5265 Fabidae View MSA
124067432 5270 Rosid View MSA
123738149 5271 Pentapetalae View MSA
122792812 5272 Eudicot View MSA
122047092 5273 Angiosperm View MSA
121345417 5274 Embryophyte View MSA
123380214 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 341.793     High  
cufflinks 242.593     High  
cufflinks 0.04     Low  
cufflinks 281.386     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  
cufflinks 314.586     High  
cufflinks 0.045     Low  

0 Strain