Gene : Medtr5g022940 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11670:SF40 - ACONITATE HYDRATASE 1 Description:  cytoplasmic-like aconitate hydratase
Genomic Order:  1308 Name:  ? Medtr5g022940
Secondary Identifier:  ? PAC:31087012
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYOXYLATE-BYPASS Medicago truncatula pathologic  
Mtruncatula PWY-5464 Medicago truncatula pathologic  
Mtruncatula PWY-561 Medicago truncatula pathologic  
Mtruncatula PWY-5690 Medicago truncatula pathologic  
Mtruncatula PWY-6549 Medicago truncatula pathologic  

Genomics

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g022940 0.5kb upstream 0.5kb upstream 8195 true chr5: 9091697-9099891 Medicago truncatula
Medtr5g022940 0.5kb upstream 0.5kb upstream 500 false chr5: 9091697-9092196 Medicago truncatula
Medtr5g022940 0.5kb downstream 0.5kb downstream 8195 true chr5: 9092197-9100391 Medicago truncatula
Medtr5g022940 0.5kb downstream 0.5kb downstream 500 false chr5: 9099892-9100391 Medicago truncatula
Medtr5g022940 1.0kb upstream 1.0kb upstream 8695 true chr5: 9091197-9099891 Medicago truncatula
Medtr5g022940 1.0kb upstream 1.0kb upstream 1000 false chr5: 9091197-9092196 Medicago truncatula
Medtr5g022940 1.0kb downstream 1.0kb downstream 8695 true chr5: 9092197-9100891 Medicago truncatula
Medtr5g022940 1.0kb downstream 1.0kb downstream 1000 false chr5: 9099892-9100891 Medicago truncatula
Medtr5g022940 2.0kb upstream 2.0kb upstream 9695 true chr5: 9090197-9099891 Medicago truncatula
Medtr5g022940 2.0kb upstream 2.0kb upstream 2000 false chr5: 9090197-9092196 Medicago truncatula
Medtr5g022940 2.0kb downstream 2.0kb downstream 9695 true chr5: 9092197-9101891 Medicago truncatula
Medtr5g022940 2.0kb downstream 2.0kb downstream 2000 false chr5: 9099892-9101891 Medicago truncatula
Medtr5g022940 5.0kb upstream 5.0kb upstream 12695 true chr5: 9087197-9099891 Medicago truncatula
Medtr5g022940 5.0kb upstream 5.0kb upstream 5000 false chr5: 9087197-9092196 Medicago truncatula
Medtr5g022940 5.0kb downstream 5.0kb downstream 12695 true chr5: 9092197-9104891 Medicago truncatula
Medtr5g022940 5.0kb downstream 5.0kb downstream 5000 false chr5: 9099892-9104891 Medicago truncatula
Medtr5g022940 10.0kb upstream 10.0kb upstream 17695 true chr5: 9082197-9099891 Medicago truncatula
Medtr5g022940 10.0kb upstream 10.0kb upstream 10000 false chr5: 9082197-9092196 Medicago truncatula
Medtr5g022940 10.0kb downstream 10.0kb downstream 17695 true chr5: 9092197-9109891 Medicago truncatula
Medtr5g022940 10.0kb downstream 10.0kb downstream 10000 false chr5: 9099892-9109891 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300043 5265 Fabidae View MSA
124069604 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.435     High  
cufflinks 15.508     High  
cufflinks 24.266     High  
cufflinks 21.625     High  
cufflinks 21.56     High  
cufflinks 10.281       Low
cufflinks 25.012     High  
cufflinks 20.245     High  
cufflinks 22.735     High  

0 Strain