Gene : Medtr5g017980 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31003//PTHR31003:SF2 - MYB FAMILY TRANSCRIPTION FACTOR Description:  myb-like DNA-binding domain, shaqkyf class protein
Genomic Order:  969 Name:  ? Medtr5g017980
Secondary Identifier:  ? PAC:31088144
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g017980 0.5kb upstream 0.5kb upstream 2712 true chr5: 6673878-6676589 Medicago truncatula
Medtr5g017980 0.5kb upstream 0.5kb upstream 500 false chr5: 6676090-6676589 Medicago truncatula
Medtr5g017980 0.5kb downstream 0.5kb downstream 2712 true chr5: 6673378-6676089 Medicago truncatula
Medtr5g017980 0.5kb downstream 0.5kb downstream 500 false chr5: 6673378-6673877 Medicago truncatula
Medtr5g017980 1.0kb upstream 1.0kb upstream 3212 true chr5: 6673878-6677089 Medicago truncatula
Medtr5g017980 1.0kb upstream 1.0kb upstream 1000 false chr5: 6676090-6677089 Medicago truncatula
Medtr5g017980 1.0kb downstream 1.0kb downstream 3212 true chr5: 6672878-6676089 Medicago truncatula
Medtr5g017980 1.0kb downstream 1.0kb downstream 1000 false chr5: 6672878-6673877 Medicago truncatula
Medtr5g017980 2.0kb upstream 2.0kb upstream 4212 true chr5: 6673878-6678089 Medicago truncatula
Medtr5g017980 2.0kb upstream 2.0kb upstream 2000 false chr5: 6676090-6678089 Medicago truncatula
Medtr5g017980 2.0kb downstream 2.0kb downstream 4212 true chr5: 6671878-6676089 Medicago truncatula
Medtr5g017980 2.0kb downstream 2.0kb downstream 2000 false chr5: 6671878-6673877 Medicago truncatula
Medtr5g017980 5.0kb upstream 5.0kb upstream 7212 true chr5: 6673878-6681089 Medicago truncatula
Medtr5g017980 5.0kb upstream 5.0kb upstream 5000 false chr5: 6676090-6681089 Medicago truncatula
Medtr5g017980 5.0kb downstream 5.0kb downstream 7212 true chr5: 6668878-6676089 Medicago truncatula
Medtr5g017980 5.0kb downstream 5.0kb downstream 5000 false chr5: 6668878-6673877 Medicago truncatula
Medtr5g017980 10.0kb upstream 10.0kb upstream 12212 true chr5: 6673878-6686089 Medicago truncatula
Medtr5g017980 10.0kb upstream 10.0kb upstream 10000 false chr5: 6676090-6686089 Medicago truncatula
Medtr5g017980 10.0kb downstream 10.0kb downstream 12212 true chr5: 6663878-6676089 Medicago truncatula
Medtr5g017980 10.0kb downstream 10.0kb downstream 10000 false chr5: 6663878-6673877 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312255 5265 Fabidae View MSA
124066907 5270 Rosid View MSA
123742212 5271 Pentapetalae View MSA
122792121 5272 Eudicot View MSA
122049766 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350891 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.051        
cufflinks 2.443        
cufflinks 5.034        
cufflinks 0.61       Low
cufflinks 0.663       Low
cufflinks 1.472        
cufflinks 6.483       High
cufflinks 4.511        
cufflinks 2.64        

0 Strain