Gene : Medtr5g018670 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR34058:SF1 - OXYGEN-EVOLVING ENHANCER PROTEIN 1-1, CHLOROPLASTIC-RELATED Description:  photosystem II oxygen-evolving enhancer protein
Genomic Order:  1017 Name:  ? Medtr5g018670
Secondary Identifier:  ? PAC:31090185
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g018670 0.5kb upstream 0.5kb upstream 2718 true chr5: 6960803-6963520 Medicago truncatula
Medtr5g018670 0.5kb upstream 0.5kb upstream 500 false chr5: 6960803-6961302 Medicago truncatula
Medtr5g018670 0.5kb downstream 0.5kb downstream 2718 true chr5: 6961303-6964020 Medicago truncatula
Medtr5g018670 0.5kb downstream 0.5kb downstream 500 false chr5: 6963521-6964020 Medicago truncatula
Medtr5g018670 1.0kb upstream 1.0kb upstream 3218 true chr5: 6960303-6963520 Medicago truncatula
Medtr5g018670 1.0kb upstream 1.0kb upstream 1000 false chr5: 6960303-6961302 Medicago truncatula
Medtr5g018670 1.0kb downstream 1.0kb downstream 3218 true chr5: 6961303-6964520 Medicago truncatula
Medtr5g018670 1.0kb downstream 1.0kb downstream 1000 false chr5: 6963521-6964520 Medicago truncatula
Medtr5g018670 2.0kb upstream 2.0kb upstream 4218 true chr5: 6959303-6963520 Medicago truncatula
Medtr5g018670 2.0kb upstream 2.0kb upstream 2000 false chr5: 6959303-6961302 Medicago truncatula
Medtr5g018670 2.0kb downstream 2.0kb downstream 4218 true chr5: 6961303-6965520 Medicago truncatula
Medtr5g018670 2.0kb downstream 2.0kb downstream 2000 false chr5: 6963521-6965520 Medicago truncatula
Medtr5g018670 5.0kb upstream 5.0kb upstream 7218 true chr5: 6956303-6963520 Medicago truncatula
Medtr5g018670 5.0kb upstream 5.0kb upstream 5000 false chr5: 6956303-6961302 Medicago truncatula
Medtr5g018670 5.0kb downstream 5.0kb downstream 7218 true chr5: 6961303-6968520 Medicago truncatula
Medtr5g018670 5.0kb downstream 5.0kb downstream 5000 false chr5: 6963521-6968520 Medicago truncatula
Medtr5g018670 10.0kb upstream 10.0kb upstream 12218 true chr5: 6951303-6963520 Medicago truncatula
Medtr5g018670 10.0kb upstream 10.0kb upstream 10000 false chr5: 6951303-6961302 Medicago truncatula
Medtr5g018670 10.0kb downstream 10.0kb downstream 12218 true chr5: 6961303-6973520 Medicago truncatula
Medtr5g018670 10.0kb downstream 10.0kb downstream 10000 false chr5: 6963521-6973520 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122264556 5265 Fabidae Singleton cluster - no MSA
124063467 5270 Rosid View MSA
123739417 5271 Pentapetalae View MSA
122788254 5272 Eudicot View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.726        
cufflinks 69.532     High High
cufflinks 74.039     High High
cufflinks 0.658       Low
cufflinks 54.401     High  
cufflinks 0.551       Low
cufflinks 1.559        
cufflinks 80.729     High High
cufflinks 1.729        

0 Strain