Gene : Medtr5g018390 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13437 - NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 Description:  hydroxyproline-rich glycoprotein family protein, putative
Genomic Order:  999 Name:  ? Medtr5g018390
Secondary Identifier:  ? PAC:31085151
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g018390 0.5kb upstream 0.5kb upstream 6658 true chr5: 6850645-6857302 Medicago truncatula
Medtr5g018390 0.5kb upstream 0.5kb upstream 500 false chr5: 6856803-6857302 Medicago truncatula
Medtr5g018390 0.5kb downstream 0.5kb downstream 6658 true chr5: 6850145-6856802 Medicago truncatula
Medtr5g018390 0.5kb downstream 0.5kb downstream 500 false chr5: 6850145-6850644 Medicago truncatula
Medtr5g018390 1.0kb upstream 1.0kb upstream 7158 true chr5: 6850645-6857802 Medicago truncatula
Medtr5g018390 1.0kb upstream 1.0kb upstream 1000 false chr5: 6856803-6857802 Medicago truncatula
Medtr5g018390 1.0kb downstream 1.0kb downstream 7158 true chr5: 6849645-6856802 Medicago truncatula
Medtr5g018390 1.0kb downstream 1.0kb downstream 1000 false chr5: 6849645-6850644 Medicago truncatula
Medtr5g018390 2.0kb upstream 2.0kb upstream 8158 true chr5: 6850645-6858802 Medicago truncatula
Medtr5g018390 2.0kb upstream 2.0kb upstream 2000 false chr5: 6856803-6858802 Medicago truncatula
Medtr5g018390 2.0kb downstream 2.0kb downstream 8158 true chr5: 6848645-6856802 Medicago truncatula
Medtr5g018390 2.0kb downstream 2.0kb downstream 2000 false chr5: 6848645-6850644 Medicago truncatula
Medtr5g018390 5.0kb upstream 5.0kb upstream 11158 true chr5: 6850645-6861802 Medicago truncatula
Medtr5g018390 5.0kb upstream 5.0kb upstream 5000 false chr5: 6856803-6861802 Medicago truncatula
Medtr5g018390 5.0kb downstream 5.0kb downstream 11158 true chr5: 6845645-6856802 Medicago truncatula
Medtr5g018390 5.0kb downstream 5.0kb downstream 5000 false chr5: 6845645-6850644 Medicago truncatula
Medtr5g018390 10.0kb upstream 10.0kb upstream 16158 true chr5: 6850645-6866802 Medicago truncatula
Medtr5g018390 10.0kb upstream 10.0kb upstream 10000 false chr5: 6856803-6866802 Medicago truncatula
Medtr5g018390 10.0kb downstream 10.0kb downstream 16158 true chr5: 6840645-6856802 Medicago truncatula
Medtr5g018390 10.0kb downstream 10.0kb downstream 10000 false chr5: 6840645-6850644 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301960 5265 Fabidae View MSA
124074755 5270 Rosid View MSA
123740540 5271 Pentapetalae View MSA
122789267 5272 Eudicot View MSA
122043040 5273 Angiosperm View MSA
121344391 5274 Embryophyte View MSA
123428093 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.602        
cufflinks 1.315        
cufflinks 1.213        
cufflinks 0.444       Low
cufflinks 1.828        
cufflinks 0.689       Low
cufflinks 1.321        
cufflinks 0.982        
cufflinks 1.946       High

0 Strain