Gene : Medtr5g010010 M. truncatula Mt4.0v1
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Description:  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Genomic Order:  414 Name:  ? Medtr5g010010
Secondary Identifier:  ? PAC:31090261
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7560 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g010010 0.5kb upstream 0.5kb upstream 5168 true chr5: 2575765-2580932 Medicago truncatula
Medtr5g010010 0.5kb upstream 0.5kb upstream 500 false chr5: 2575765-2576264 Medicago truncatula
Medtr5g010010 0.5kb downstream 0.5kb downstream 5168 true chr5: 2576265-2581432 Medicago truncatula
Medtr5g010010 0.5kb downstream 0.5kb downstream 500 false chr5: 2580933-2581432 Medicago truncatula
Medtr5g010010 1.0kb upstream 1.0kb upstream 5668 true chr5: 2575265-2580932 Medicago truncatula
Medtr5g010010 1.0kb upstream 1.0kb upstream 1000 false chr5: 2575265-2576264 Medicago truncatula
Medtr5g010010 1.0kb downstream 1.0kb downstream 5668 true chr5: 2576265-2581932 Medicago truncatula
Medtr5g010010 1.0kb downstream 1.0kb downstream 1000 false chr5: 2580933-2581932 Medicago truncatula
Medtr5g010010 2.0kb upstream 2.0kb upstream 6668 true chr5: 2574265-2580932 Medicago truncatula
Medtr5g010010 2.0kb upstream 2.0kb upstream 2000 false chr5: 2574265-2576264 Medicago truncatula
Medtr5g010010 2.0kb downstream 2.0kb downstream 6668 true chr5: 2576265-2582932 Medicago truncatula
Medtr5g010010 2.0kb downstream 2.0kb downstream 2000 false chr5: 2580933-2582932 Medicago truncatula
Medtr5g010010 5.0kb upstream 5.0kb upstream 9668 true chr5: 2571265-2580932 Medicago truncatula
Medtr5g010010 5.0kb upstream 5.0kb upstream 5000 false chr5: 2571265-2576264 Medicago truncatula
Medtr5g010010 5.0kb downstream 5.0kb downstream 9668 true chr5: 2576265-2585932 Medicago truncatula
Medtr5g010010 5.0kb downstream 5.0kb downstream 5000 false chr5: 2580933-2585932 Medicago truncatula
Medtr5g010010 10.0kb upstream 10.0kb upstream 14668 true chr5: 2566265-2580932 Medicago truncatula
Medtr5g010010 10.0kb upstream 10.0kb upstream 10000 false chr5: 2566265-2576264 Medicago truncatula
Medtr5g010010 10.0kb downstream 10.0kb downstream 14668 true chr5: 2576265-2590932 Medicago truncatula
Medtr5g010010 10.0kb downstream 10.0kb downstream 10000 false chr5: 2580933-2590932 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305262 5265 Fabidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.586       Low
cufflinks 10.241     High High
cufflinks 7.354        
cufflinks 4.24        
cufflinks 9.55       High
cufflinks 1.878       Low
cufflinks 2.049       Low
cufflinks 8.094        
cufflinks 3.922        

0 Strain