Gene : Medtr5g015790 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR32370:SF26 - BTB/POZ DOMAIN-CONTAINING PROTEIN NPY3-RELATED Description:  phototropic-responsive NPH3 family protein
Genomic Order:  826 Name:  ? Medtr5g015790
Secondary Identifier:  ? PAC:31090478
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g015790 0.5kb upstream 0.5kb upstream 6080 true chr5: 5528581-5534660 Medicago truncatula
Medtr5g015790 0.5kb upstream 0.5kb upstream 500 false chr5: 5528581-5529080 Medicago truncatula
Medtr5g015790 0.5kb downstream 0.5kb downstream 6080 true chr5: 5529081-5535160 Medicago truncatula
Medtr5g015790 0.5kb downstream 0.5kb downstream 500 false chr5: 5534661-5535160 Medicago truncatula
Medtr5g015790 1.0kb upstream 1.0kb upstream 6580 true chr5: 5528081-5534660 Medicago truncatula
Medtr5g015790 1.0kb upstream 1.0kb upstream 1000 false chr5: 5528081-5529080 Medicago truncatula
Medtr5g015790 1.0kb downstream 1.0kb downstream 6580 true chr5: 5529081-5535660 Medicago truncatula
Medtr5g015790 1.0kb downstream 1.0kb downstream 1000 false chr5: 5534661-5535660 Medicago truncatula
Medtr5g015790 2.0kb upstream 2.0kb upstream 7580 true chr5: 5527081-5534660 Medicago truncatula
Medtr5g015790 2.0kb upstream 2.0kb upstream 2000 false chr5: 5527081-5529080 Medicago truncatula
Medtr5g015790 2.0kb downstream 2.0kb downstream 7580 true chr5: 5529081-5536660 Medicago truncatula
Medtr5g015790 2.0kb downstream 2.0kb downstream 2000 false chr5: 5534661-5536660 Medicago truncatula
Medtr5g015790 5.0kb upstream 5.0kb upstream 10580 true chr5: 5524081-5534660 Medicago truncatula
Medtr5g015790 5.0kb upstream 5.0kb upstream 5000 false chr5: 5524081-5529080 Medicago truncatula
Medtr5g015790 5.0kb downstream 5.0kb downstream 10580 true chr5: 5529081-5539660 Medicago truncatula
Medtr5g015790 5.0kb downstream 5.0kb downstream 5000 false chr5: 5534661-5539660 Medicago truncatula
Medtr5g015790 10.0kb upstream 10.0kb upstream 15580 true chr5: 5519081-5534660 Medicago truncatula
Medtr5g015790 10.0kb upstream 10.0kb upstream 10000 false chr5: 5519081-5529080 Medicago truncatula
Medtr5g015790 10.0kb downstream 10.0kb downstream 15580 true chr5: 5529081-5544660 Medicago truncatula
Medtr5g015790 10.0kb downstream 10.0kb downstream 10000 false chr5: 5534661-5544660 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300314 5265 Fabidae View MSA
124069258 5270 Rosid View MSA
123743807 5271 Pentapetalae View MSA
122790043 5272 Eudicot View MSA
122047329 5273 Angiosperm View MSA
121350883 5274 Embryophyte View MSA
123381921 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.941        
cufflinks 15.293     High High
cufflinks 13.341     High  
cufflinks 2.243        
cufflinks 15.03     High High
cufflinks 1.212       Low
cufflinks 2.898        
cufflinks 14.165     High High
cufflinks 2.395        

0 Strain