Gene : Medtr5g010470 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0050 - mRNA splicing protein CDC5 (Myb superfamily) Description:  pre-mRNA splicing factor component protein
Genomic Order:  453 Name:  ? Medtr5g010470
Secondary Identifier:  ? PAC:31091008
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g010470 0.5kb upstream 0.5kb upstream 6058 true chr5: 2809255-2815312 Medicago truncatula
Medtr5g010470 0.5kb upstream 0.5kb upstream 500 false chr5: 2814813-2815312 Medicago truncatula
Medtr5g010470 0.5kb downstream 0.5kb downstream 6058 true chr5: 2808755-2814812 Medicago truncatula
Medtr5g010470 0.5kb downstream 0.5kb downstream 500 false chr5: 2808755-2809254 Medicago truncatula
Medtr5g010470 1.0kb upstream 1.0kb upstream 6558 true chr5: 2809255-2815812 Medicago truncatula
Medtr5g010470 1.0kb upstream 1.0kb upstream 1000 false chr5: 2814813-2815812 Medicago truncatula
Medtr5g010470 1.0kb downstream 1.0kb downstream 6558 true chr5: 2808255-2814812 Medicago truncatula
Medtr5g010470 1.0kb downstream 1.0kb downstream 1000 false chr5: 2808255-2809254 Medicago truncatula
Medtr5g010470 2.0kb upstream 2.0kb upstream 7558 true chr5: 2809255-2816812 Medicago truncatula
Medtr5g010470 2.0kb upstream 2.0kb upstream 2000 false chr5: 2814813-2816812 Medicago truncatula
Medtr5g010470 2.0kb downstream 2.0kb downstream 7558 true chr5: 2807255-2814812 Medicago truncatula
Medtr5g010470 2.0kb downstream 2.0kb downstream 2000 false chr5: 2807255-2809254 Medicago truncatula
Medtr5g010470 5.0kb upstream 5.0kb upstream 10558 true chr5: 2809255-2819812 Medicago truncatula
Medtr5g010470 5.0kb upstream 5.0kb upstream 5000 false chr5: 2814813-2819812 Medicago truncatula
Medtr5g010470 5.0kb downstream 5.0kb downstream 10558 true chr5: 2804255-2814812 Medicago truncatula
Medtr5g010470 5.0kb downstream 5.0kb downstream 5000 false chr5: 2804255-2809254 Medicago truncatula
Medtr5g010470 10.0kb upstream 10.0kb upstream 15558 true chr5: 2809255-2824812 Medicago truncatula
Medtr5g010470 10.0kb upstream 10.0kb upstream 10000 false chr5: 2814813-2824812 Medicago truncatula
Medtr5g010470 10.0kb downstream 10.0kb downstream 15558 true chr5: 2799255-2814812 Medicago truncatula
Medtr5g010470 10.0kb downstream 10.0kb downstream 10000 false chr5: 2799255-2809254 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122264758 5265 Fabidae Singleton cluster - no MSA
124066169 5270 Rosid View MSA
123736747 5271 Pentapetalae View MSA
122790894 5272 Eudicot View MSA
122043628 5273 Angiosperm View MSA
121344956 5274 Embryophyte View MSA
123426908 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.006       High
cufflinks 1.047        
cufflinks 1.996        
cufflinks 1.09        
cufflinks 1.894        
cufflinks 0.554       Low
cufflinks 1.949        
cufflinks 1.523        
cufflinks 1.232        

0 Strain