Gene : Medtr5g012060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR21181:SF13 - NADH DEHYDROGENASE (UBIQUINONE) COMPLEX I, ASSEMBLY FACTOR 6 Description:  squalene/phytoene synthase
Genomic Order:  578 Name:  ? Medtr5g012060
Secondary Identifier:  ? PAC:31090745
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g012060 0.5kb upstream 0.5kb upstream 4152 true chr5: 3565295-3569446 Medicago truncatula
Medtr5g012060 0.5kb upstream 0.5kb upstream 500 false chr5: 3565295-3565794 Medicago truncatula
Medtr5g012060 0.5kb downstream 0.5kb downstream 4152 true chr5: 3565795-3569946 Medicago truncatula
Medtr5g012060 0.5kb downstream 0.5kb downstream 500 false chr5: 3569447-3569946 Medicago truncatula
Medtr5g012060 1.0kb upstream 1.0kb upstream 4652 true chr5: 3564795-3569446 Medicago truncatula
Medtr5g012060 1.0kb upstream 1.0kb upstream 1000 false chr5: 3564795-3565794 Medicago truncatula
Medtr5g012060 1.0kb downstream 1.0kb downstream 4652 true chr5: 3565795-3570446 Medicago truncatula
Medtr5g012060 1.0kb downstream 1.0kb downstream 1000 false chr5: 3569447-3570446 Medicago truncatula
Medtr5g012060 2.0kb upstream 2.0kb upstream 5652 true chr5: 3563795-3569446 Medicago truncatula
Medtr5g012060 2.0kb upstream 2.0kb upstream 2000 false chr5: 3563795-3565794 Medicago truncatula
Medtr5g012060 2.0kb downstream 2.0kb downstream 5652 true chr5: 3565795-3571446 Medicago truncatula
Medtr5g012060 2.0kb downstream 2.0kb downstream 2000 false chr5: 3569447-3571446 Medicago truncatula
Medtr5g012060 5.0kb upstream 5.0kb upstream 8652 true chr5: 3560795-3569446 Medicago truncatula
Medtr5g012060 5.0kb upstream 5.0kb upstream 5000 false chr5: 3560795-3565794 Medicago truncatula
Medtr5g012060 5.0kb downstream 5.0kb downstream 8652 true chr5: 3565795-3574446 Medicago truncatula
Medtr5g012060 5.0kb downstream 5.0kb downstream 5000 false chr5: 3569447-3574446 Medicago truncatula
Medtr5g012060 10.0kb upstream 10.0kb upstream 13652 true chr5: 3555795-3569446 Medicago truncatula
Medtr5g012060 10.0kb upstream 10.0kb upstream 10000 false chr5: 3555795-3565794 Medicago truncatula
Medtr5g012060 10.0kb downstream 10.0kb downstream 13652 true chr5: 3565795-3579446 Medicago truncatula
Medtr5g012060 10.0kb downstream 10.0kb downstream 10000 false chr5: 3569447-3579446 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301762 5265 Fabidae View MSA
124062167 5270 Rosid View MSA
123739547 5271 Pentapetalae View MSA
122788763 5272 Eudicot View MSA
122043915 5273 Angiosperm View MSA
121344708 5274 Embryophyte View MSA
123424120 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.525       Low
cufflinks 2.55        
cufflinks 3.49       High
cufflinks 3.727       High
cufflinks 2.429        
cufflinks 1.611       Low
cufflinks 1.697       Low
cufflinks 2.548        
cufflinks 2.656        

0 Strain