Gene : Medtr5g012110 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF00805 - Pentapeptide repeats (8 copies) (Pentapeptide) Description:  thylakoid lumenal protein
Genomic Order:  580 Name:  ? Medtr5g012110
Secondary Identifier:  ? PAC:31089190
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g012110 0.5kb upstream 0.5kb upstream 2691 true chr5: 3583273-3585963 Medicago truncatula
Medtr5g012110 0.5kb upstream 0.5kb upstream 500 false chr5: 3585464-3585963 Medicago truncatula
Medtr5g012110 0.5kb downstream 0.5kb downstream 2691 true chr5: 3582773-3585463 Medicago truncatula
Medtr5g012110 0.5kb downstream 0.5kb downstream 500 false chr5: 3582773-3583272 Medicago truncatula
Medtr5g012110 1.0kb upstream 1.0kb upstream 3191 true chr5: 3583273-3586463 Medicago truncatula
Medtr5g012110 1.0kb upstream 1.0kb upstream 1000 false chr5: 3585464-3586463 Medicago truncatula
Medtr5g012110 1.0kb downstream 1.0kb downstream 3191 true chr5: 3582273-3585463 Medicago truncatula
Medtr5g012110 1.0kb downstream 1.0kb downstream 1000 false chr5: 3582273-3583272 Medicago truncatula
Medtr5g012110 2.0kb upstream 2.0kb upstream 4191 true chr5: 3583273-3587463 Medicago truncatula
Medtr5g012110 2.0kb upstream 2.0kb upstream 2000 false chr5: 3585464-3587463 Medicago truncatula
Medtr5g012110 2.0kb downstream 2.0kb downstream 4191 true chr5: 3581273-3585463 Medicago truncatula
Medtr5g012110 2.0kb downstream 2.0kb downstream 2000 false chr5: 3581273-3583272 Medicago truncatula
Medtr5g012110 5.0kb upstream 5.0kb upstream 7191 true chr5: 3583273-3590463 Medicago truncatula
Medtr5g012110 5.0kb upstream 5.0kb upstream 5000 false chr5: 3585464-3590463 Medicago truncatula
Medtr5g012110 5.0kb downstream 5.0kb downstream 7191 true chr5: 3578273-3585463 Medicago truncatula
Medtr5g012110 5.0kb downstream 5.0kb downstream 5000 false chr5: 3578273-3583272 Medicago truncatula
Medtr5g012110 10.0kb upstream 10.0kb upstream 12191 true chr5: 3583273-3595463 Medicago truncatula
Medtr5g012110 10.0kb upstream 10.0kb upstream 10000 false chr5: 3585464-3595463 Medicago truncatula
Medtr5g012110 10.0kb downstream 10.0kb downstream 12191 true chr5: 3573273-3585463 Medicago truncatula
Medtr5g012110 10.0kb downstream 10.0kb downstream 10000 false chr5: 3573273-3583272 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299546 5265 Fabidae View MSA
124066075 5270 Rosid View MSA
123751077 5271 Pentapetalae View MSA
122794954 5272 Eudicot View MSA
122044610 5273 Angiosperm View MSA
121348286 5274 Embryophyte View MSA
123426937 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101        
cufflinks 13.251     High High
cufflinks 7.367        
cufflinks 0.09        
cufflinks 11.256     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.053     Low Low
cufflinks 12.324     High  
cufflinks 0.098        

0 Strain