Gene : Medtr5g011800 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR33593:SF2 - F5O11.5 Description:  DUF1442 family protein
Genomic Order:  559 Name:  ? Medtr5g011800
Secondary Identifier:  ? PAC:31088106
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g011800 0.5kb upstream 0.5kb upstream 1519 true chr5: 3451834-3453352 Medicago truncatula
Medtr5g011800 0.5kb upstream 0.5kb upstream 500 false chr5: 3452853-3453352 Medicago truncatula
Medtr5g011800 0.5kb downstream 0.5kb downstream 1519 true chr5: 3451334-3452852 Medicago truncatula
Medtr5g011800 0.5kb downstream 0.5kb downstream 500 false chr5: 3451334-3451833 Medicago truncatula
Medtr5g011800 1.0kb upstream 1.0kb upstream 2019 true chr5: 3451834-3453852 Medicago truncatula
Medtr5g011800 1.0kb upstream 1.0kb upstream 1000 false chr5: 3452853-3453852 Medicago truncatula
Medtr5g011800 1.0kb downstream 1.0kb downstream 2019 true chr5: 3450834-3452852 Medicago truncatula
Medtr5g011800 1.0kb downstream 1.0kb downstream 1000 false chr5: 3450834-3451833 Medicago truncatula
Medtr5g011800 2.0kb upstream 2.0kb upstream 3019 true chr5: 3451834-3454852 Medicago truncatula
Medtr5g011800 2.0kb upstream 2.0kb upstream 2000 false chr5: 3452853-3454852 Medicago truncatula
Medtr5g011800 2.0kb downstream 2.0kb downstream 3019 true chr5: 3449834-3452852 Medicago truncatula
Medtr5g011800 2.0kb downstream 2.0kb downstream 2000 false chr5: 3449834-3451833 Medicago truncatula
Medtr5g011800 5.0kb upstream 5.0kb upstream 6019 true chr5: 3451834-3457852 Medicago truncatula
Medtr5g011800 5.0kb upstream 5.0kb upstream 5000 false chr5: 3452853-3457852 Medicago truncatula
Medtr5g011800 5.0kb downstream 5.0kb downstream 6019 true chr5: 3446834-3452852 Medicago truncatula
Medtr5g011800 5.0kb downstream 5.0kb downstream 5000 false chr5: 3446834-3451833 Medicago truncatula
Medtr5g011800 10.0kb upstream 10.0kb upstream 11019 true chr5: 3451834-3462852 Medicago truncatula
Medtr5g011800 10.0kb upstream 10.0kb upstream 10000 false chr5: 3452853-3462852 Medicago truncatula
Medtr5g011800 10.0kb downstream 10.0kb downstream 11019 true chr5: 3441834-3452852 Medicago truncatula
Medtr5g011800 10.0kb downstream 10.0kb downstream 10000 false chr5: 3441834-3451833 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041482 5273 Angiosperm View MSA
122310790 5265 Fabidae View MSA
124070642 5270 Rosid View MSA
123743657 5271 Pentapetalae View MSA
122790548 5272 Eudicot View MSA
121348528 5274 Embryophyte View MSA
123380900 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.977     High  
cufflinks 5.045       Low
cufflinks 22.925     High  
cufflinks 34.977     High  
cufflinks 16.727     High  
cufflinks 20.652     High  
cufflinks 92.931     High High
cufflinks 15.797     High  
cufflinks 83.86     High High

0 Strain