Gene : Medtr5g012680 M. truncatula Mt4.0v1
Defline:  (1 of 4) 3.4.24.12 - Envelysin / Sea-urchin-hatching proteinase Description:  matrix metalloproteinase
Genomic Order:  612 Name:  ? Medtr5g012680
Secondary Identifier:  ? PAC:31090192
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g012680 0.5kb upstream 0.5kb upstream 1958 true chr5: 3864354-3866311 Medicago truncatula
Medtr5g012680 0.5kb upstream 0.5kb upstream 500 false chr5: 3865812-3866311 Medicago truncatula
Medtr5g012680 0.5kb downstream 0.5kb downstream 1958 true chr5: 3863854-3865811 Medicago truncatula
Medtr5g012680 0.5kb downstream 0.5kb downstream 500 false chr5: 3863854-3864353 Medicago truncatula
Medtr5g012680 1.0kb upstream 1.0kb upstream 2458 true chr5: 3864354-3866811 Medicago truncatula
Medtr5g012680 1.0kb upstream 1.0kb upstream 1000 false chr5: 3865812-3866811 Medicago truncatula
Medtr5g012680 1.0kb downstream 1.0kb downstream 2458 true chr5: 3863354-3865811 Medicago truncatula
Medtr5g012680 1.0kb downstream 1.0kb downstream 1000 false chr5: 3863354-3864353 Medicago truncatula
Medtr5g012680 2.0kb upstream 2.0kb upstream 3458 true chr5: 3864354-3867811 Medicago truncatula
Medtr5g012680 2.0kb upstream 2.0kb upstream 2000 false chr5: 3865812-3867811 Medicago truncatula
Medtr5g012680 2.0kb downstream 2.0kb downstream 3458 true chr5: 3862354-3865811 Medicago truncatula
Medtr5g012680 2.0kb downstream 2.0kb downstream 2000 false chr5: 3862354-3864353 Medicago truncatula
Medtr5g012680 5.0kb upstream 5.0kb upstream 6458 true chr5: 3864354-3870811 Medicago truncatula
Medtr5g012680 5.0kb upstream 5.0kb upstream 5000 false chr5: 3865812-3870811 Medicago truncatula
Medtr5g012680 5.0kb downstream 5.0kb downstream 6458 true chr5: 3859354-3865811 Medicago truncatula
Medtr5g012680 5.0kb downstream 5.0kb downstream 5000 false chr5: 3859354-3864353 Medicago truncatula
Medtr5g012680 10.0kb upstream 10.0kb upstream 11458 true chr5: 3864354-3875811 Medicago truncatula
Medtr5g012680 10.0kb upstream 10.0kb upstream 10000 false chr5: 3865812-3875811 Medicago truncatula
Medtr5g012680 10.0kb downstream 10.0kb downstream 11458 true chr5: 3854354-3865811 Medicago truncatula
Medtr5g012680 10.0kb downstream 10.0kb downstream 10000 false chr5: 3854354-3864353 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305020 5265 Fabidae View MSA
124070256 5270 Rosid View MSA
123748450 5271 Pentapetalae View MSA
122786815 5272 Eudicot View MSA
122041842 5273 Angiosperm View MSA
121350353 5274 Embryophyte View MSA
123381692 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.412        
cufflinks 0.329        
cufflinks 0.491        
cufflinks 2.566       High
cufflinks 0.456        
cufflinks 1.392        
cufflinks 3.842       High
cufflinks 0.264       Low
cufflinks 1.181        

0 Strain