Gene : Medtr5g013540 M. truncatula Mt4.0v1
Defline:  (1 of 5) KOG0884 - Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase Description:  peptidyl-prolyl cis-trans isomerase
Genomic Order:  676 Name:  ? Medtr5g013540
Secondary Identifier:  ? PAC:31085317
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g013540 0.5kb upstream 0.5kb upstream 4610 true chr5: 4312738-4317347 Medicago truncatula
Medtr5g013540 0.5kb upstream 0.5kb upstream 500 false chr5: 4316848-4317347 Medicago truncatula
Medtr5g013540 0.5kb downstream 0.5kb downstream 4610 true chr5: 4312238-4316847 Medicago truncatula
Medtr5g013540 0.5kb downstream 0.5kb downstream 500 false chr5: 4312238-4312737 Medicago truncatula
Medtr5g013540 1.0kb upstream 1.0kb upstream 5110 true chr5: 4312738-4317847 Medicago truncatula
Medtr5g013540 1.0kb upstream 1.0kb upstream 1000 false chr5: 4316848-4317847 Medicago truncatula
Medtr5g013540 1.0kb downstream 1.0kb downstream 5110 true chr5: 4311738-4316847 Medicago truncatula
Medtr5g013540 1.0kb downstream 1.0kb downstream 1000 false chr5: 4311738-4312737 Medicago truncatula
Medtr5g013540 2.0kb upstream 2.0kb upstream 6110 true chr5: 4312738-4318847 Medicago truncatula
Medtr5g013540 2.0kb upstream 2.0kb upstream 2000 false chr5: 4316848-4318847 Medicago truncatula
Medtr5g013540 2.0kb downstream 2.0kb downstream 6110 true chr5: 4310738-4316847 Medicago truncatula
Medtr5g013540 2.0kb downstream 2.0kb downstream 2000 false chr5: 4310738-4312737 Medicago truncatula
Medtr5g013540 5.0kb upstream 5.0kb upstream 9110 true chr5: 4312738-4321847 Medicago truncatula
Medtr5g013540 5.0kb upstream 5.0kb upstream 5000 false chr5: 4316848-4321847 Medicago truncatula
Medtr5g013540 5.0kb downstream 5.0kb downstream 9110 true chr5: 4307738-4316847 Medicago truncatula
Medtr5g013540 5.0kb downstream 5.0kb downstream 5000 false chr5: 4307738-4312737 Medicago truncatula
Medtr5g013540 10.0kb upstream 10.0kb upstream 14110 true chr5: 4312738-4326847 Medicago truncatula
Medtr5g013540 10.0kb upstream 10.0kb upstream 10000 false chr5: 4316848-4326847 Medicago truncatula
Medtr5g013540 10.0kb downstream 10.0kb downstream 14110 true chr5: 4302738-4316847 Medicago truncatula
Medtr5g013540 10.0kb downstream 10.0kb downstream 10000 false chr5: 4302738-4312737 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300761 5265 Fabidae View MSA
124071456 5270 Rosid View MSA
123751062 5271 Pentapetalae View MSA
122773901 5272 Eudicot View MSA
122043023 5273 Angiosperm View MSA
121350933 5274 Embryophyte View MSA
123428077 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.925       Low
cufflinks 6.769        
cufflinks 11.975     High High
cufflinks 5.198        
cufflinks 6.316        
cufflinks 3.193       Low
cufflinks 7.145        
cufflinks 9.337     High  
cufflinks 6.387        

0 Strain