Gene : Medtr5g013320 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10809:SF42 - VESICLE-ASSOCIATED PROTEIN 2-1 Description:  VAMP-associated protein
Genomic Order:  660 Name:  ? Medtr5g013320
Secondary Identifier:  ? PAC:31086474
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g013320 0.5kb upstream 0.5kb upstream 4968 true chr5: 4204400-4209367 Medicago truncatula
Medtr5g013320 0.5kb upstream 0.5kb upstream 500 false chr5: 4204400-4204899 Medicago truncatula
Medtr5g013320 0.5kb downstream 0.5kb downstream 4968 true chr5: 4204900-4209867 Medicago truncatula
Medtr5g013320 0.5kb downstream 0.5kb downstream 500 false chr5: 4209368-4209867 Medicago truncatula
Medtr5g013320 1.0kb upstream 1.0kb upstream 5468 true chr5: 4203900-4209367 Medicago truncatula
Medtr5g013320 1.0kb upstream 1.0kb upstream 1000 false chr5: 4203900-4204899 Medicago truncatula
Medtr5g013320 1.0kb downstream 1.0kb downstream 5468 true chr5: 4204900-4210367 Medicago truncatula
Medtr5g013320 1.0kb downstream 1.0kb downstream 1000 false chr5: 4209368-4210367 Medicago truncatula
Medtr5g013320 2.0kb upstream 2.0kb upstream 6468 true chr5: 4202900-4209367 Medicago truncatula
Medtr5g013320 2.0kb upstream 2.0kb upstream 2000 false chr5: 4202900-4204899 Medicago truncatula
Medtr5g013320 2.0kb downstream 2.0kb downstream 6468 true chr5: 4204900-4211367 Medicago truncatula
Medtr5g013320 2.0kb downstream 2.0kb downstream 2000 false chr5: 4209368-4211367 Medicago truncatula
Medtr5g013320 5.0kb upstream 5.0kb upstream 9468 true chr5: 4199900-4209367 Medicago truncatula
Medtr5g013320 5.0kb upstream 5.0kb upstream 5000 false chr5: 4199900-4204899 Medicago truncatula
Medtr5g013320 5.0kb downstream 5.0kb downstream 9468 true chr5: 4204900-4214367 Medicago truncatula
Medtr5g013320 5.0kb downstream 5.0kb downstream 5000 false chr5: 4209368-4214367 Medicago truncatula
Medtr5g013320 10.0kb upstream 10.0kb upstream 14468 true chr5: 4194900-4209367 Medicago truncatula
Medtr5g013320 10.0kb upstream 10.0kb upstream 10000 false chr5: 4194900-4204899 Medicago truncatula
Medtr5g013320 10.0kb downstream 10.0kb downstream 14468 true chr5: 4204900-4219367 Medicago truncatula
Medtr5g013320 10.0kb downstream 10.0kb downstream 10000 false chr5: 4209368-4219367 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314559 5265 Fabidae View MSA
124070661 5270 Rosid View MSA
123750934 5271 Pentapetalae View MSA
122796486 5272 Eudicot View MSA
122049501 5273 Angiosperm View MSA
121311441 5274 Embryophyte View MSA
123348736 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.667       High
cufflinks 0.657        
cufflinks 1.276        
cufflinks 0.677        
cufflinks 0.515        
cufflinks 0.296       Low
cufflinks 0.801        
cufflinks 0.517        
cufflinks 1.082        

0 Strain