Gene : Medtr5g007480 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13856//PTHR13856:SF93 - VHS DOMAIN CONTAINING PROTEIN FAMILY Description:  protein transporter
Genomic Order:  217 Name:  ? Medtr5g007480
Secondary Identifier:  ? PAC:31091595
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g007480 0.5kb upstream 0.5kb upstream 4725 true chr5: 1372618-1377342 Medicago truncatula
Medtr5g007480 0.5kb upstream 0.5kb upstream 500 false chr5: 1376843-1377342 Medicago truncatula
Medtr5g007480 0.5kb downstream 0.5kb downstream 4725 true chr5: 1372118-1376842 Medicago truncatula
Medtr5g007480 0.5kb downstream 0.5kb downstream 500 false chr5: 1372118-1372617 Medicago truncatula
Medtr5g007480 1.0kb upstream 1.0kb upstream 5225 true chr5: 1372618-1377842 Medicago truncatula
Medtr5g007480 1.0kb upstream 1.0kb upstream 1000 false chr5: 1376843-1377842 Medicago truncatula
Medtr5g007480 1.0kb downstream 1.0kb downstream 5225 true chr5: 1371618-1376842 Medicago truncatula
Medtr5g007480 1.0kb downstream 1.0kb downstream 1000 false chr5: 1371618-1372617 Medicago truncatula
Medtr5g007480 2.0kb upstream 2.0kb upstream 6225 true chr5: 1372618-1378842 Medicago truncatula
Medtr5g007480 2.0kb upstream 2.0kb upstream 2000 false chr5: 1376843-1378842 Medicago truncatula
Medtr5g007480 2.0kb downstream 2.0kb downstream 6225 true chr5: 1370618-1376842 Medicago truncatula
Medtr5g007480 2.0kb downstream 2.0kb downstream 2000 false chr5: 1370618-1372617 Medicago truncatula
Medtr5g007480 5.0kb upstream 5.0kb upstream 9225 true chr5: 1372618-1381842 Medicago truncatula
Medtr5g007480 5.0kb upstream 5.0kb upstream 5000 false chr5: 1376843-1381842 Medicago truncatula
Medtr5g007480 5.0kb downstream 5.0kb downstream 9225 true chr5: 1367618-1376842 Medicago truncatula
Medtr5g007480 5.0kb downstream 5.0kb downstream 5000 false chr5: 1367618-1372617 Medicago truncatula
Medtr5g007480 10.0kb upstream 10.0kb upstream 14225 true chr5: 1372618-1386842 Medicago truncatula
Medtr5g007480 10.0kb upstream 10.0kb upstream 10000 false chr5: 1376843-1386842 Medicago truncatula
Medtr5g007480 10.0kb downstream 10.0kb downstream 14225 true chr5: 1362618-1376842 Medicago truncatula
Medtr5g007480 10.0kb downstream 10.0kb downstream 10000 false chr5: 1362618-1372617 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300783 5265 Fabidae View MSA
124062688 5270 Rosid View MSA
123746960 5271 Pentapetalae View MSA
122785601 5272 Eudicot View MSA
122046025 5273 Angiosperm View MSA
121345678 5274 Embryophyte View MSA
123380253 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.606     High  
cufflinks 20.094     High  
cufflinks 19.146     High  
cufflinks 18.216     High  
cufflinks 15.581     High Low
cufflinks 20.792     High  
cufflinks 35.718     High High
cufflinks 15.524     High Low
cufflinks 33.853     High High

0 Strain