Gene : Medtr5g014890 M. truncatula Mt4.0v1

Defline:  (1 of 2) PTHR24326:SF252 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 Description:  homeobox associated leucine zipper protein
Genomic Order:  771 Name:  ? Medtr5g014890
Secondary Identifier:  ? PAC:31088754

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g014890 0.5kb upstream 0.5kb upstream 2636 true chr5: 5064298-5066933 Medicago truncatula
Medtr5g014890 0.5kb upstream 0.5kb upstream 500 false chr5: 5066434-5066933 Medicago truncatula
Medtr5g014890 0.5kb downstream 0.5kb downstream 2636 true chr5: 5063798-5066433 Medicago truncatula
Medtr5g014890 0.5kb downstream 0.5kb downstream 500 false chr5: 5063798-5064297 Medicago truncatula
Medtr5g014890 1.0kb upstream 1.0kb upstream 3136 true chr5: 5064298-5067433 Medicago truncatula
Medtr5g014890 1.0kb upstream 1.0kb upstream 1000 false chr5: 5066434-5067433 Medicago truncatula
Medtr5g014890 1.0kb downstream 1.0kb downstream 3136 true chr5: 5063298-5066433 Medicago truncatula
Medtr5g014890 1.0kb downstream 1.0kb downstream 1000 false chr5: 5063298-5064297 Medicago truncatula
Medtr5g014890 2.0kb upstream 2.0kb upstream 4136 true chr5: 5064298-5068433 Medicago truncatula
Medtr5g014890 2.0kb upstream 2.0kb upstream 2000 false chr5: 5066434-5068433 Medicago truncatula
Medtr5g014890 2.0kb downstream 2.0kb downstream 4136 true chr5: 5062298-5066433 Medicago truncatula
Medtr5g014890 2.0kb downstream 2.0kb downstream 2000 false chr5: 5062298-5064297 Medicago truncatula
Medtr5g014890 5.0kb upstream 5.0kb upstream 7136 true chr5: 5064298-5071433 Medicago truncatula
Medtr5g014890 5.0kb upstream 5.0kb upstream 5000 false chr5: 5066434-5071433 Medicago truncatula
Medtr5g014890 5.0kb downstream 5.0kb downstream 7136 true chr5: 5059298-5066433 Medicago truncatula
Medtr5g014890 5.0kb downstream 5.0kb downstream 5000 false chr5: 5059298-5064297 Medicago truncatula
Medtr5g014890 10.0kb upstream 10.0kb upstream 12136 true chr5: 5064298-5076433 Medicago truncatula
Medtr5g014890 10.0kb upstream 10.0kb upstream 10000 false chr5: 5066434-5076433 Medicago truncatula
Medtr5g014890 10.0kb downstream 10.0kb downstream 12136 true chr5: 5054298-5066433 Medicago truncatula
Medtr5g014890 10.0kb downstream 10.0kb downstream 10000 false chr5: 5054298-5064297 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300653 5265 Fabidae View MSA
124064901 5270 Rosid View MSA
123747506 5271 Pentapetalae View MSA
122796686 5272 Eudicot View MSA
122050134 5273 Angiosperm View MSA
121351534 5274 Embryophyte View MSA
123382211 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.52     High Low
cufflinks 45.159     High  
cufflinks 37.815     High  
cufflinks 26.977     High  
cufflinks 27.617     High  
cufflinks 21.479     High  
cufflinks 46.936     High  
cufflinks 39.027     High  
cufflinks 60.026     High High

0 Strain