Gene : Medtr5g007260 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.5.1.87 - Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific) / Rer2p Z-prenyltransferase Description:  undecaprenyl pyrophosphate synthetase family protein
Genomic Order:  200 Name:  ? Medtr5g007260
Secondary Identifier:  ? PAC:31091660
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6129 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g007260 0.5kb upstream 0.5kb upstream 6133 true chr5: 1262772-1268904 Medicago truncatula
Medtr5g007260 0.5kb upstream 0.5kb upstream 500 false chr5: 1262772-1263271 Medicago truncatula
Medtr5g007260 0.5kb downstream 0.5kb downstream 6133 true chr5: 1263272-1269404 Medicago truncatula
Medtr5g007260 0.5kb downstream 0.5kb downstream 500 false chr5: 1268905-1269404 Medicago truncatula
Medtr5g007260 1.0kb upstream 1.0kb upstream 6633 true chr5: 1262272-1268904 Medicago truncatula
Medtr5g007260 1.0kb upstream 1.0kb upstream 1000 false chr5: 1262272-1263271 Medicago truncatula
Medtr5g007260 1.0kb downstream 1.0kb downstream 6633 true chr5: 1263272-1269904 Medicago truncatula
Medtr5g007260 1.0kb downstream 1.0kb downstream 1000 false chr5: 1268905-1269904 Medicago truncatula
Medtr5g007260 2.0kb upstream 2.0kb upstream 7633 true chr5: 1261272-1268904 Medicago truncatula
Medtr5g007260 2.0kb upstream 2.0kb upstream 2000 false chr5: 1261272-1263271 Medicago truncatula
Medtr5g007260 2.0kb downstream 2.0kb downstream 7633 true chr5: 1263272-1270904 Medicago truncatula
Medtr5g007260 2.0kb downstream 2.0kb downstream 2000 false chr5: 1268905-1270904 Medicago truncatula
Medtr5g007260 5.0kb upstream 5.0kb upstream 10633 true chr5: 1258272-1268904 Medicago truncatula
Medtr5g007260 5.0kb upstream 5.0kb upstream 5000 false chr5: 1258272-1263271 Medicago truncatula
Medtr5g007260 5.0kb downstream 5.0kb downstream 10633 true chr5: 1263272-1273904 Medicago truncatula
Medtr5g007260 5.0kb downstream 5.0kb downstream 5000 false chr5: 1268905-1273904 Medicago truncatula
Medtr5g007260 10.0kb upstream 10.0kb upstream 15633 true chr5: 1253272-1268904 Medicago truncatula
Medtr5g007260 10.0kb upstream 10.0kb upstream 10000 false chr5: 1253272-1263271 Medicago truncatula
Medtr5g007260 10.0kb downstream 10.0kb downstream 15633 true chr5: 1263272-1278904 Medicago truncatula
Medtr5g007260 10.0kb downstream 10.0kb downstream 10000 false chr5: 1268905-1278904 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306673 5265 Fabidae View MSA
124061993 5270 Rosid View MSA
123744162 5271 Pentapetalae View MSA
122791831 5272 Eudicot View MSA
122045568 5273 Angiosperm View MSA
121310466 5274 Embryophyte View MSA
123347940 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.815        
cufflinks 0.705        
cufflinks 0.779        
cufflinks 0.404        
cufflinks 0.929       High
cufflinks 0.362        
cufflinks 0.334       Low
cufflinks 0.687        
cufflinks 0.276       Low

0 Strain